Deprecated!
This application is deprecated. Please use the latest version of the tool here.
Please cite:
I. S. Vlachos, M. D. Paraskevopoulou, D. Karagkouni, G. Georgakilas, T. Vergoulis, I. Kanellos, I-L. Anastasopoulos, S. Maniou, K. Karathanou, D. Kalfakakou, A. Fevgas, T. Dalamagas and A. G. Hatzigeorgiou. DIANA-TarBase v7.0: indexing more than half a million experimentally supported miRNA:mRNA interactions. Nucl. Acids Res. (2014)
Data Download:
DIANA-TarBase v7 is available for scientific non-profit and non-commercial use! Download TarBase v7 by following this link
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Method Type
Method
Regulation type
Validation type
Validated as
Source
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Prediction score
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Gene name
miRNA name
Methods
Pred.Score
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
chr2:167301232-167301254 (UNKNOWN)
2 libraries from Ago2-RN complex in C2C12 myotubes. AGO immunoprecipitation with monoclonal anti-EIF2C2 antibody.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
chr14:77826351-77826378 (UNKNOWN)
In vitro activated CD4+ T cells from spleen and lymph nodes. AGO immunoprecipitation was performed with a polyclonal antibody generated against an Argonaute 2 N-terminal peptide. 12 HITS-CLIP libraries from KO miR-155 CD4+ cells.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
chr7:6703973-6703998 (UNKNOWN)
2 libraries from Ago2-RN complex in C2C12 myotubes. AGO immunoprecipitation with monoclonal anti-EIF2C2 antibody.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
chr11:16917341-16917363 (UNKNOWN)
8-10 week old male C57Bl/6 mice. 2 biological replicates for quiescent liver. HITS-CLIP was performed using the monoclonal argonaute antibody 2A8
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
chr15:11388176-11388200 (UNKNOWN)
In vitro activated CD4+ T cells from spleen and lymph nodes. AGO immunoprecipitation was performed with a polyclonal antibody generated against an Argonaute 2 N-terminal peptide. 12 HITS-CLIP libraries from WT CD4+ cells.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
chr12:101836408-101836431 (UNKNOWN)
In vitro activated CD4+ T cells from spleen and lymph nodes. AGO immunoprecipitation was performed with a polyclonal antibody generated against an Argonaute 2 N-terminal peptide. 12 HITS-CLIP libraries from WT CD4+ cells.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Location
Method
Result
Regulation
Valid. type
Source
chr12:101836408-101836431 (UNKNOWN)
2 libraries from Ago2-RN complex in C2C12 myoblasts. AGO immunoprecipitation with monoclonal anti-EIF2C2 antibody.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
chr6:34157774-34157800 (UNKNOWN)
In vitro activated CD4+ T cells from spleen and lymph nodes. AGO immunoprecipitation was performed with a polyclonal antibody generated against an Argonaute 2 N-terminal peptide. 12 HITS-CLIP libraries from KO miR-155 CD4+ cells.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Location
Method
Result
Regulation
Valid. type
Source
chr6:34157774-34157800 (UNKNOWN)
In vitro activated CD4+ T cells from spleen and lymph nodes. AGO immunoprecipitation was performed with a polyclonal antibody generated against an Argonaute 2 N-terminal peptide. 12 HITS-CLIP libraries from WT CD4+ cells.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
chr5:148505176-148505204 (UNKNOWN)
2 libraries from Ago2-RN complex in C2C12 myoblasts. AGO immunoprecipitation with monoclonal anti-EIF2C2 antibody.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
chr13:9686745-9686766 (UNKNOWN)
In vitro activated CD4+ T cells from spleen and lymph nodes. AGO immunoprecipitation was performed with a polyclonal antibody generated against an Argonaute 2 N-terminal peptide. 12 HITS-CLIP libraries from KO miR-155 CD4+ cells.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
chr10:24597826-24597849 (UNKNOWN)
2 libraries from Ago2-RN complex in C2C12 myoblasts. AGO immunoprecipitation with monoclonal anti-EIF2C2 antibody.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
chr16:32300706-32300734 (UNKNOWN)
2 libraries from Ago2-RN complex in C2C12 myotubes. AGO immunoprecipitation with monoclonal anti-EIF2C2 antibody.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
chr11:98036851-98036873 (UNKNOWN)
2 libraries from Ago2-RN complex in C2C12 myoblasts. AGO immunoprecipitation with monoclonal anti-EIF2C2 antibody.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
chr12:32851000-32851023 (UNKNOWN)
2 libraries from Ago2-RN complex in C2C12 myotubes. AGO immunoprecipitation with monoclonal anti-EIF2C2 antibody.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
chr15:101212423-101212441 (UNKNOWN)
2 libraries from Ago2-RN complex in C2C12 myoblasts. AGO immunoprecipitation with monoclonal anti-EIF2C2 antibody.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
chr15:101212423-101212441 (UNKNOWN)
2 libraries from Ago2-RN complex in C2C12 myotubes. AGO immunoprecipitation with monoclonal anti-EIF2C2 antibody.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
chr7:17031899-17031926 (UNKNOWN)
In vitro activated CD4+ T cells from spleen and lymph nodes. AGO immunoprecipitation was performed with a polyclonal antibody generated against an Argonaute 2 N-terminal peptide. 12 HITS-CLIP libraries from WT CD4+ cells.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
chr7:17042644-17042669 (UNKNOWN)
In vitro activated CD4+ T cells from spleen and lymph nodes. AGO immunoprecipitation was performed with a polyclonal antibody generated against an Argonaute 2 N-terminal peptide. 12 HITS-CLIP libraries from WT CD4+ cells.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Location
Method
Result
Regulation
Valid. type
Source
chr7:17042644-17042669 (UNKNOWN)
In vitro activated CD4+ T cells from spleen and lymph nodes. AGO immunoprecipitation was performed with a polyclonal antibody generated against an Argonaute 2 N-terminal peptide. 12 HITS-CLIP libraries from KO miR-155 CD4+ cells.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
chr13:37975708-37975734 (UNKNOWN)
2 libraries from Ago2-RN complex in C2C12 myotubes. AGO immunoprecipitation with monoclonal anti-EIF2C2 antibody.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
chr13:37976331-37976356 (UNKNOWN)
2 libraries from Ago2-RN complex in C2C12 myoblasts. AGO immunoprecipitation with monoclonal anti-EIF2C2 antibody.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
chr13:37976331-37976356 (UNKNOWN)
2 libraries from Ago2-RN complex in C2C12 myotubes. AGO immunoprecipitation with monoclonal anti-EIF2C2 antibody.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
chr9:14542974-14543000 (UNKNOWN)
2 libraries from Ago2-RN complex in C2C12 myoblasts. AGO immunoprecipitation with monoclonal anti-EIF2C2 antibody.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
chr9:14542974-14543000 (UNKNOWN)
2 libraries from Ago2-RN complex in C2C12 myotubes. AGO immunoprecipitation with monoclonal anti-EIF2C2 antibody.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
chr5:114363705-114363729 (UNKNOWN)
2 libraries from Ago2-RN complex in C2C12 myotubes. AGO immunoprecipitation with monoclonal anti-EIF2C2 antibody.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
chr11:8996760-8996784 (UNKNOWN)
2 libraries from Ago2-RN complex in C2C12 myoblasts. AGO immunoprecipitation with monoclonal anti-EIF2C2 antibody.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
chr13:92853499-92853521 (UNKNOWN)
2 libraries from Ago2-RN complex in C2C12 myoblasts. AGO immunoprecipitation with monoclonal anti-EIF2C2 antibody.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
chr11:55233769-55233796 (UNKNOWN)
2 libraries from Ago2-RN complex in C2C12 myoblasts. AGO immunoprecipitation with monoclonal anti-EIF2C2 antibody.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
chr9:44805041-44805060 (UNKNOWN)
2 libraries from Ago2-RN complex in C2C12 myoblasts. AGO immunoprecipitation with monoclonal anti-EIF2C2 antibody.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
chr9:44805955-44805979 (UNKNOWN)
2 libraries from Ago2-RN complex in C2C12 myoblasts. AGO immunoprecipitation with monoclonal anti-EIF2C2 antibody.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
chr9:44805955-44805979 (UNKNOWN)
2 libraries from Ago2-RN complex in C2C12 myotubes. AGO immunoprecipitation with monoclonal anti-EIF2C2 antibody.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
chr5:136218796-136218812 (UNKNOWN)
2 libraries from Ago2-RN complex in C2C12 myoblasts. AGO immunoprecipitation with monoclonal anti-EIF2C2 antibody.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
chr11:49674876-49674898 (UNKNOWN)
8-10 week old male C57Bl/6 mice underwent partial hepatectomy using isofluorane anesthesia between 8 AM and noon, and livers were harvested at the indicated time points after partial hepatectomy. 2 biological replicates for the 48hr timepoint. HITS-CLIP was performed using the monoclonal argonaute antibody 2A8
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Plcg1 (mmu)
mmu-miR-210-3p
-
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
chr2:160759665-160759693 (UNKNOWN)
2 libraries from Ago2-RN complex in C2C12 myoblasts. AGO immunoprecipitation with monoclonal anti-EIF2C2 antibody.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Ctnnb1 (mmu)
mmu-miR-210-3p
-
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
chr9:120933900-120933927 (UNKNOWN)
2 libraries from Ago2-RN complex in C2C12 myoblasts. AGO immunoprecipitation with monoclonal anti-EIF2C2 antibody.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Acin1 (mmu)
mmu-miR-210-3p
-
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
chr14:54642897-54642920 (UNKNOWN)
2 libraries from Ago2-RN complex in C2C12 myotubes. AGO immunoprecipitation with monoclonal anti-EIF2C2 antibody.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Nxf1 (mmu)
mmu-miR-210-3p
-
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
chr19:8766013-8766037 (UNKNOWN)
2 libraries from Ago2-RN complex in C2C12 myoblasts. AGO immunoprecipitation with monoclonal anti-EIF2C2 antibody.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Tmem129 (mmu)
mmu-miR-210-3p
-
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
chr5:33653692-33653714 (UNKNOWN)
2 libraries from Ago2-RN complex in C2C12 myotubes. AGO immunoprecipitation with monoclonal anti-EIF2C2 antibody.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Nedd9 (mmu)
mmu-miR-210-3p
-
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
chr13:41311929-41311951 (UNKNOWN)
2 libraries from Ago2-RN complex in C2C12 myotubes. AGO immunoprecipitation with monoclonal anti-EIF2C2 antibody.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Trim23 (mmu)
mmu-miR-210-3p
-
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
chr13:104201940-104201962 (UNKNOWN)
In vitro activated CD4+ T cells from spleen and lymph nodes. AGO immunoprecipitation was performed with a polyclonal antibody generated against an Argonaute 2 N-terminal peptide. 12 HITS-CLIP libraries from WT CD4+ cells.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Location
Method
Result
Regulation
Valid. type
Source
chr13:104201940-104201962 (UNKNOWN)
In vitro activated CD4+ T cells from spleen and lymph nodes. AGO immunoprecipitation was performed with a polyclonal antibody generated against an Argonaute 2 N-terminal peptide. 12 HITS-CLIP libraries from KO miR-155 CD4+ cells.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Location
Method
Result
Regulation
Valid. type
Source
chr13:104201940-104201962 (UNKNOWN)
2 libraries from Ago2-RN complex in C2C12 myotubes. AGO immunoprecipitation with monoclonal anti-EIF2C2 antibody.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Il6st (mmu)
mmu-miR-210-3p
-
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
chr13:112503834-112503859 (UNKNOWN)
8-10 week old male C57Bl/6 mice underwent partial hepatectomy using isofluorane anesthesia between 8 AM and noon, and livers were harvested at the indicated time points after partial hepatectomy. 2 biological replicates for the 48hr timepoint. HITS-CLIP was performed using the monoclonal argonaute antibody 2A8
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Net1 (mmu)
mmu-miR-210-3p
-
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
chr13:3887610-3887632 (UNKNOWN)
2 libraries from Ago2-RN complex in C2C12 myoblasts. AGO immunoprecipitation with monoclonal anti-EIF2C2 antibody.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Hcfc2 (mmu)
mmu-miR-210-3p
-
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
chr10:82739045-82739070 (UNKNOWN)
In vitro activated CD4+ T cells from spleen and lymph nodes. AGO immunoprecipitation was performed with a polyclonal antibody generated against an Argonaute 2 N-terminal peptide. 12 HITS-CLIP libraries from KO miR-155 CD4+ cells.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Location
Method
Result
Regulation
Valid. type
Source
chr10:82739045-82739070 (UNKNOWN)
In vitro activated CD4+ T cells from spleen and lymph nodes. AGO immunoprecipitation was performed with a polyclonal antibody generated against an Argonaute 2 N-terminal peptide. 12 HITS-CLIP libraries from WT CD4+ cells.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Location
Method
Result
Regulation
Valid. type
Source
chr10:82739045-82739070 (UNKNOWN)
2 libraries from Ago2-RN complex in C2C12 myotubes. AGO immunoprecipitation with monoclonal anti-EIF2C2 antibody.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Acox1 (mmu)
mmu-miR-210-3p
-
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
chr11:116198641-116198661 (UNKNOWN)
8-10 week old male C57Bl/6 mice underwent partial hepatectomy using isofluorane anesthesia between 8 AM and noon, and livers were harvested at the indicated time points after partial hepatectomy. 2 biological replicates for the 1hr timepoint. HITS-CLIP was performed using the monoclonal argonaute antibody 2A8
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Tmem39a (mmu)
mmu-miR-210-3p
-
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
chr16:38585360-38585379 (UNKNOWN)
2 libraries from Ago2-RN complex in C2C12 myoblasts. AGO immunoprecipitation with monoclonal anti-EIF2C2 antibody.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
chr16:38585360-38585379 (UNKNOWN)
2 libraries from Ago2-RN complex in C2C12 myotubes. AGO immunoprecipitation with monoclonal anti-EIF2C2 antibody.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Kbtbd4 (mmu)
mmu-miR-210-3p
-
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
chr2:90910115-90910141 (UNKNOWN)
2 libraries from Ago2-RN complex in C2C12 myotubes. AGO immunoprecipitation with monoclonal anti-EIF2C2 antibody.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Hif1a (mmu)
mmu-miR-210-3p
-
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
chr12:73942063-73942087 (UNKNOWN)
In vitro activated CD4+ T cells from spleen and lymph nodes. AGO immunoprecipitation was performed with a polyclonal antibody generated against an Argonaute 2 N-terminal peptide. 12 HITS-CLIP libraries from KO miR-155 CD4+ cells.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Ddx46 (mmu)
mmu-miR-210-3p
-
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
chr13:55680061-55680082 (UNKNOWN)
2 libraries from Ago2-RN complex in C2C12 myotubes. AGO immunoprecipitation with monoclonal anti-EIF2C2 antibody.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Celf1 (mmu)
mmu-miR-210-3p
-
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
chr2:91019021-91019043 (UNKNOWN)
In vitro activated CD4+ T cells from spleen and lymph nodes. AGO immunoprecipitation was performed with a polyclonal antibody generated against an Argonaute 2 N-terminal peptide. 12 HITS-CLIP libraries from KO miR-155 CD4+ cells.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Location
Method
Result
Regulation
Valid. type
Source
chr2:91019021-91019043 (UNKNOWN)
In vitro activated CD4+ T cells from spleen and lymph nodes. AGO immunoprecipitation was performed with a polyclonal antibody generated against an Argonaute 2 N-terminal peptide. 12 HITS-CLIP libraries from WT CD4+ cells.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Cpeb4 (mmu)
mmu-miR-210-3p
-
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
chr11:31933558-31933583 (UNKNOWN)
In vitro activated CD4+ T cells from spleen and lymph nodes. AGO immunoprecipitation was performed with a polyclonal antibody generated against an Argonaute 2 N-terminal peptide. 12 HITS-CLIP libraries from WT CD4+ cells.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Tshz3 (mmu)
mmu-miR-210-3p
-
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
chr7:36771537-36771561 (UNKNOWN)
2 libraries from Ago2-RN complex in C2C12 myoblasts. AGO immunoprecipitation with monoclonal anti-EIF2C2 antibody.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Cdc42 (mmu)
mmu-miR-210-3p
-
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
chr4:137321075-137321095 (UNKNOWN)
In vitro activated CD4+ T cells from spleen and lymph nodes. AGO immunoprecipitation was performed with a polyclonal antibody generated against an Argonaute 2 N-terminal peptide. 12 HITS-CLIP libraries from KO miR-155 CD4+ cells.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Location
Method
Result
Regulation
Valid. type
Source
chr4:137321075-137321095 (UNKNOWN)
In vitro activated CD4+ T cells from spleen and lymph nodes. AGO immunoprecipitation was performed with a polyclonal antibody generated against an Argonaute 2 N-terminal peptide. 12 HITS-CLIP libraries from WT CD4+ cells.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Ap2a2 (mmu)
mmu-miR-210-3p
-
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
chr7:141632685-141632713 (UNKNOWN)
2 libraries from Ago2-RN complex in C2C12 myoblasts. AGO immunoprecipitation with monoclonal anti-EIF2C2 antibody.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Col6a2 (mmu)
mmu-miR-210-3p
-
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
chr10:76599641-76599663 (UNKNOWN)
2 libraries from Ago2-RN complex in C2C12 myotubes. AGO immunoprecipitation with monoclonal anti-EIF2C2 antibody.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Rad21 (mmu)
mmu-miR-210-3p
-
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
chr15:51982659-51982679 (UNKNOWN)
In vitro activated CD4+ T cells from spleen and lymph nodes. AGO immunoprecipitation was performed with a polyclonal antibody generated against an Argonaute 2 N-terminal peptide. 12 HITS-CLIP libraries from KO miR-155 CD4+ cells.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Aldh1l2 (mmu)
mmu-miR-210-3p
-
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
chr10:83522723-83522745 (UNKNOWN)
2 libraries from Ago2-RN complex in C2C12 myotubes. AGO immunoprecipitation with monoclonal anti-EIF2C2 antibody.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Narf (mmu)
mmu-miR-210-3p
-
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
chr11:121254030-121254051 (UNKNOWN)
2 libraries from Ago2-RN complex in C2C12 myotubes. AGO immunoprecipitation with monoclonal anti-EIF2C2 antibody.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Pbld1 (mmu)
mmu-miR-210-3p
-
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
chr10:63077822-63077842 (UNKNOWN)
8-10 week old male C57Bl/6 mice. 2 biological replicates for quiescent liver. HITS-CLIP was performed using the monoclonal argonaute antibody 2A8
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Ephb3 (mmu)
mmu-miR-210-3p
-
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
chr16:21223195-21223221 (UNKNOWN)
2 libraries from Ago2-RN complex in C2C12 myotubes. AGO immunoprecipitation with monoclonal anti-EIF2C2 antibody.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Rabl6 (mmu)
mmu-miR-210-3p
-
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
chr2:25583275-25583303 (UNKNOWN)
8-10 week old male C57Bl/6 mice. 2 biological replicates for quiescent liver. HITS-CLIP was performed using the monoclonal argonaute antibody 2A8
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Papola (mmu)
mmu-miR-210-3p
-
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
chr12:105838618-105838642 (UNKNOWN)
2 libraries from Ago2-RN complex in C2C12 myoblasts. AGO immunoprecipitation with monoclonal anti-EIF2C2 antibody.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
chr12:105838618-105838642 (UNKNOWN)
2 libraries from Ago2-RN complex in C2C12 myotubes. AGO immunoprecipitation with monoclonal anti-EIF2C2 antibody.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Stard3nl (mmu)
mmu-miR-210-3p
-
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
chr13:19357725-19357752 (UNKNOWN)
In vitro activated CD4+ T cells from spleen and lymph nodes. AGO immunoprecipitation was performed with a polyclonal antibody generated against an Argonaute 2 N-terminal peptide. 12 HITS-CLIP libraries from WT CD4+ cells.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Location
Method
Result
Regulation
Valid. type
Source
chr13:19357725-19357752 (UNKNOWN)
2 libraries from Ago2-RN complex in C2C12 myoblasts. AGO immunoprecipitation with monoclonal anti-EIF2C2 antibody.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Rrm2b (mmu)
mmu-miR-210-3p
-
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
chr15:37925696-37925718 (UNKNOWN)
2 libraries from Ago2-RN complex in C2C12 myoblasts. AGO immunoprecipitation with monoclonal anti-EIF2C2 antibody.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
chr15:37925696-37925718 (UNKNOWN)
2 libraries from Ago2-RN complex in C2C12 myotubes. AGO immunoprecipitation with monoclonal anti-EIF2C2 antibody.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Myod1 (mmu)
mmu-miR-210-3p
-
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
chr7:46376846-46376863 (UNKNOWN)
2 libraries from Ago2-RN complex in C2C12 myotubes. AGO immunoprecipitation with monoclonal anti-EIF2C2 antibody.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Drosha (mmu)
mmu-miR-210-3p
-
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
chr15:12851820-12851844 (UNKNOWN)
2 libraries from Ago2-RN complex in C2C12 myotubes. AGO immunoprecipitation with monoclonal anti-EIF2C2 antibody.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Rab11a (mmu)
mmu-miR-210-3p
-
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
chr9:64728281-64728309 (UNKNOWN)
2 libraries from Ago2-RN complex in C2C12 myoblasts. AGO immunoprecipitation with monoclonal anti-EIF2C2 antibody.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Hivep1 (mmu)
mmu-miR-210-3p
-
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
chr13:42155639-42155661 (UNKNOWN)
2 libraries from Ago2-RN complex in C2C12 myotubes. AGO immunoprecipitation with monoclonal anti-EIF2C2 antibody.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Zfp334 (mmu)
mmu-miR-210-3p
-
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
chr2:165378546-165378568 (UNKNOWN)
2 libraries from Ago2-RN complex in C2C12 myoblasts. AGO immunoprecipitation with monoclonal anti-EIF2C2 antibody.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
chr2:165378546-165378568 (UNKNOWN)
2 libraries from Ago2-RN complex in C2C12 myotubes. AGO immunoprecipitation with monoclonal anti-EIF2C2 antibody.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Pank3 (mmu)
mmu-miR-210-3p
-
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
chr11:35788449-35788469 (UNKNOWN)
2 libraries from Ago2-RN complex in C2C12 myoblasts. AGO immunoprecipitation with monoclonal anti-EIF2C2 antibody.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
chr11:35788523-35788546 (UNKNOWN)
2 libraries from Ago2-RN complex in C2C12 myotubes. AGO immunoprecipitation with monoclonal anti-EIF2C2 antibody.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
B4galnt1 (mmu)
mmu-miR-210-3p
-
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
chr10:127166166-127166189 (UNKNOWN)
In vitro activated CD4+ T cells from spleen and lymph nodes. AGO immunoprecipitation was performed with a polyclonal antibody generated against an Argonaute 2 N-terminal peptide. 12 HITS-CLIP libraries from WT CD4+ cells.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Location
Method
Result
Regulation
Valid. type
Source
chr10:127166166-127166189 (UNKNOWN)
In vitro activated CD4+ T cells from spleen and lymph nodes. AGO immunoprecipitation was performed with a polyclonal antibody generated against an Argonaute 2 N-terminal peptide. 12 HITS-CLIP libraries from KO miR-155 CD4+ cells.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Actn1 (mmu)
mmu-miR-210-3p
-
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
chr12:80167573-80167590 (UNKNOWN)
8-10 week old male C57Bl/6 mice underwent partial hepatectomy using isofluorane anesthesia between 8 AM and noon, and livers were harvested at the indicated time points after partial hepatectomy. 2 biological replicates for the 48hr timepoint. HITS-CLIP was performed using the monoclonal argonaute antibody 2A8
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Ctr9 (mmu)
mmu-miR-210-3p
-
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
chr7:111034398-111034416 (UNKNOWN)
In vitro activated CD4+ T cells from spleen and lymph nodes. AGO immunoprecipitation was performed with a polyclonal antibody generated against an Argonaute 2 N-terminal peptide. 12 HITS-CLIP libraries from WT CD4+ cells.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Ap1m1 (mmu)
mmu-miR-210-3p
-
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
chr8:72257283-72257301 (UNKNOWN)
2 libraries from Ago2-RN complex in C2C12 myoblasts. AGO immunoprecipitation with monoclonal anti-EIF2C2 antibody.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Dlg5 (mmu)
mmu-miR-210-3p
-
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
chr14:24134243-24134258 (UNKNOWN)
2 libraries from Ago2-RN complex in C2C12 myotubes. AGO immunoprecipitation with monoclonal anti-EIF2C2 antibody.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Phf7 (mmu)
mmu-miR-210-3p
-
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
chr14:31250759-31250778 (UNKNOWN)
2 libraries from Ago2-RN complex in C2C12 myotubes. AGO immunoprecipitation with monoclonal anti-EIF2C2 antibody.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Nfib (mmu)
mmu-miR-210-3p
-
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
chr4:82293541-82293562 (UNKNOWN)
2 libraries from Ago2-RN complex in C2C12 myotubes. AGO immunoprecipitation with monoclonal anti-EIF2C2 antibody.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Crnkl1 (mmu)
mmu-miR-210-3p
-
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
chr2:145932276-145932301 (UNKNOWN)
In vitro activated CD4+ T cells from spleen and lymph nodes. AGO immunoprecipitation was performed with a polyclonal antibody generated against an Argonaute 2 N-terminal peptide. 12 HITS-CLIP libraries from WT CD4+ cells.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Location
Method
Result
Regulation
Valid. type
Source
chr2:145932276-145932301 (UNKNOWN)
In vitro activated CD4+ T cells from spleen and lymph nodes. AGO immunoprecipitation was performed with a polyclonal antibody generated against an Argonaute 2 N-terminal peptide. 12 HITS-CLIP libraries from KO miR-155 CD4+ cells.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Fam120b (mmu)
mmu-miR-210-3p
-
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
chr17:15402915-15402935 (UNKNOWN)
2 libraries from Ago2-RN complex in C2C12 myoblasts. AGO immunoprecipitation with monoclonal anti-EIF2C2 antibody.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Zdhhc4 (mmu)
mmu-miR-210-3p
-
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
chr5:143326099-143326125 (UNKNOWN)
2 libraries from Ago2-RN complex in C2C12 myoblasts. AGO immunoprecipitation with monoclonal anti-EIF2C2 antibody.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Ppp2ca (mmu)
mmu-miR-210-3p
-
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
chr11:52124808-52124835 (UNKNOWN)
2 libraries from Ago2-RN complex in C2C12 myoblasts. AGO immunoprecipitation with monoclonal anti-EIF2C2 antibody.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Pcnx (mmu)
mmu-miR-210-3p
-
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
chr12:81919029-81919051 (UNKNOWN)
2 libraries from Ago2-RN complex in C2C12 myoblasts. AGO immunoprecipitation with monoclonal anti-EIF2C2 antibody.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
chr12:81919029-81919051 (UNKNOWN)
2 libraries from Ago2-RN complex in C2C12 myotubes. AGO immunoprecipitation with monoclonal anti-EIF2C2 antibody.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Mettl6 (mmu)
mmu-miR-210-3p
-
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
chr14:31479314-31479335 (UNKNOWN)
2 libraries from Ago2-RN complex in C2C12 myoblasts. AGO immunoprecipitation with monoclonal anti-EIF2C2 antibody.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
chr14:31479314-31479335 (UNKNOWN)
2 libraries from Ago2-RN complex in C2C12 myotubes. AGO immunoprecipitation with monoclonal anti-EIF2C2 antibody.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Cdc37 (mmu)
mmu-miR-210-3p
-
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
chr9:21142966-21142994 (UNKNOWN)
2 libraries from Ago2-RN complex in C2C12 myoblasts. AGO immunoprecipitation with monoclonal anti-EIF2C2 antibody.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Ppp3cb (mmu)
mmu-miR-210-3p
-
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
chr14:20501527-20501545 (UNKNOWN)
2 libraries from Ago2-RN complex in C2C12 myoblasts. AGO immunoprecipitation with monoclonal anti-EIF2C2 antibody.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Nf1 (mmu)
mmu-miR-210-3p
-
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
chr11:79436727-79436751 (UNKNOWN)
2 libraries from Ago2-RN complex in C2C12 myoblasts. AGO immunoprecipitation with monoclonal anti-EIF2C2 antibody.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Arid3b (mmu)
mmu-miR-210-3p
-
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
chr9:57790996-57791018 (UNKNOWN)
2 libraries from Ago2-RN complex in C2C12 myoblasts. AGO immunoprecipitation with monoclonal anti-EIF2C2 antibody.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
chr9:57790996-57791018 (UNKNOWN)
2 libraries from Ago2-RN complex in C2C12 myotubes. AGO immunoprecipitation with monoclonal anti-EIF2C2 antibody.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Fzd6 (mmu)
mmu-miR-210-3p
-
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
chr15:39034931-39034953 (UNKNOWN)
2 libraries from Ago2-RN complex in C2C12 myoblasts. AGO immunoprecipitation with monoclonal anti-EIF2C2 antibody.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Snap47 (mmu)
mmu-miR-210-3p
-
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
chr11:59428568-59428592 (UNKNOWN)
8-10 week old male C57Bl/6 mice underwent partial hepatectomy using isofluorane anesthesia between 8 AM and noon, and livers were harvested at the indicated time points after partial hepatectomy. 2 biological replicates for the 48hr timepoint. HITS-CLIP was performed using the monoclonal argonaute antibody 2A8
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Peli1 (mmu)
mmu-miR-210-3p
-
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
chr11:21148413-21148434 (UNKNOWN)
In vitro activated CD4+ T cells from spleen and lymph nodes. AGO immunoprecipitation was performed with a polyclonal antibody generated against an Argonaute 2 N-terminal peptide. 12 HITS-CLIP libraries from KO miR-155 CD4+ cells.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Cdk12 (mmu)
mmu-miR-210-3p
-
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
chr11:98241740-98241765 (UNKNOWN)
2 libraries from Ago2-RN complex in C2C12 myoblasts. AGO immunoprecipitation with monoclonal anti-EIF2C2 antibody.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Atp6v0d1 (mmu)
mmu-miR-210-3p
-
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
chr8:105539305-105539329 (UNKNOWN)
2 libraries from Ago2-RN complex in C2C12 myoblasts. AGO immunoprecipitation with monoclonal anti-EIF2C2 antibody.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Taok1 (mmu)
mmu-miR-210-3p
-
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
chr11:77538289-77538310 (UNKNOWN)
In vitro activated CD4+ T cells from spleen and lymph nodes. AGO immunoprecipitation was performed with a polyclonal antibody generated against an Argonaute 2 N-terminal peptide. 12 HITS-CLIP libraries from KO miR-155 CD4+ cells.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Ppp2r2a (mmu)
mmu-miR-210-3p
-
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
chr14:67016532-67016552 (UNKNOWN)
2 libraries from Ago2-RN complex in C2C12 myoblasts. AGO immunoprecipitation with monoclonal anti-EIF2C2 antibody.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Ifrd1 (mmu)
mmu-miR-210-3p
-
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
chr12:40223034-40223056 (UNKNOWN)
2 libraries from Ago2-RN complex in C2C12 myotubes. AGO immunoprecipitation with monoclonal anti-EIF2C2 antibody.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Cops6 (mmu)
mmu-miR-210-3p
-
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
chr5:138163347-138163375 (UNKNOWN)
2 libraries from Ago2-RN complex in C2C12 myoblasts. AGO immunoprecipitation with monoclonal anti-EIF2C2 antibody.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Nsd1 (mmu)
mmu-miR-210-3p
-
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
chr13:55301777-55301800 (UNKNOWN)
In vitro activated CD4+ T cells from spleen and lymph nodes. AGO immunoprecipitation was performed with a polyclonal antibody generated against an Argonaute 2 N-terminal peptide. 12 HITS-CLIP libraries from KO miR-155 CD4+ cells.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Dlg4 (mmu)
mmu-miR-210-3p
-
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
chr11:70044970-70044990 (UNKNOWN)
2 libraries from Ago2-RN complex in C2C12 myoblasts. AGO immunoprecipitation with monoclonal anti-EIF2C2 antibody.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Psap (mmu)
mmu-miR-210-3p
-
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
chr10:60302129-60302149 (UNKNOWN)
In vitro activated CD4+ T cells from spleen and lymph nodes. AGO immunoprecipitation was performed with a polyclonal antibody generated against an Argonaute 2 N-terminal peptide. 12 HITS-CLIP libraries from KO miR-155 CD4+ cells.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Kdm6b (mmu)
mmu-miR-210-3p
-
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
chr11:69404301-69404322 (UNKNOWN)
2 libraries from Ago2-RN complex in C2C12 myoblasts. AGO immunoprecipitation with monoclonal anti-EIF2C2 antibody.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Ap1b1 (mmu)
mmu-miR-210-3p
-
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
chr11:5042566-5042588 (UNKNOWN)
2 libraries from Ago2-RN complex in C2C12 myoblasts. AGO immunoprecipitation with monoclonal anti-EIF2C2 antibody.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Pfkl (mmu)
mmu-miR-210-3p
-
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
chr10:78000805-78000826 (UNKNOWN)
2 libraries from Ago2-RN complex in C2C12 myotubes. AGO immunoprecipitation with monoclonal anti-EIF2C2 antibody.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Nkd2 (mmu)
mmu-miR-210-3p
-
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
chr13:73819986-73820008 (UNKNOWN)
2 libraries from Ago2-RN complex in C2C12 myotubes. AGO immunoprecipitation with monoclonal anti-EIF2C2 antibody.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Apaf1 (mmu)
mmu-miR-210-3p
-
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
chr10:90990942-90990965 (UNKNOWN)
In vitro activated CD4+ T cells from spleen and lymph nodes. AGO immunoprecipitation was performed with a polyclonal antibody generated against an Argonaute 2 N-terminal peptide. 12 HITS-CLIP libraries from KO miR-155 CD4+ cells.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Trio (mmu)
mmu-miR-210-3p
-
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
chr15:27763957-27763979 (UNKNOWN)
2 libraries from Ago2-RN complex in C2C12 myoblasts. AGO immunoprecipitation with monoclonal anti-EIF2C2 antibody.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Hnrnph3 (mmu)
mmu-miR-210-3p
-
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
chr10:63018839-63018858 (UNKNOWN)
2 libraries from Ago2-RN complex in C2C12 myoblasts. AGO immunoprecipitation with monoclonal anti-EIF2C2 antibody.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Smg5 (mmu)
mmu-miR-210-3p
-
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
chr3:88350184-88350210 (UNKNOWN)
2 libraries from Ago2-RN complex in C2C12 myotubes. AGO immunoprecipitation with monoclonal anti-EIF2C2 antibody.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Pde4d (mmu)
mmu-miR-210-3p
-
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
chr13:109936739-109936764 (UNKNOWN)
In vitro activated CD4+ T cells from spleen and lymph nodes. AGO immunoprecipitation was performed with a polyclonal antibody generated against an Argonaute 2 N-terminal peptide. 12 HITS-CLIP libraries from KO miR-155 CD4+ cells.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Myo18a (mmu)
mmu-miR-210-3p
-
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
chr11:77777585-77777613 (UNKNOWN)
8-10 week old male C57Bl/6 mice underwent partial hepatectomy using isofluorane anesthesia between 8 AM and noon, and livers were harvested at the indicated time points after partial hepatectomy. 2 biological replicates for the 48hr timepoint. HITS-CLIP was performed using the monoclonal argonaute antibody 2A8
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Golga2 (mmu)
mmu-miR-210-3p
-
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
chr2:32307397-32307423 (UNKNOWN)
2 libraries from Ago2-RN complex in C2C12 myoblasts. AGO immunoprecipitation with monoclonal anti-EIF2C2 antibody.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0