Deprecated!
This application is deprecated. Please use the latest version of the tool here.
Please cite:
I. S. Vlachos, M. D. Paraskevopoulou, D. Karagkouni, G. Georgakilas, T. Vergoulis, I. Kanellos, I-L. Anastasopoulos, S. Maniou, K. Karathanou, D. Kalfakakou, A. Fevgas, T. Dalamagas and A. G. Hatzigeorgiou. DIANA-TarBase v7.0: indexing more than half a million experimentally supported miRNA:mRNA interactions. Nucl. Acids Res. (2014)
Data Download:
DIANA-TarBase v7 is available for scientific non-profit and non-commercial use! Download TarBase v7 by following this link
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Species
Method Type
Method
Regulation type
Validation type
Validated as
Source
Publication year
Prediction score
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Gene name
miRNA name
Methods
Pred.Score
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
chr2:76695671-76695696 (UNKNOWN)
In vitro activated CD4+ T cells from spleen and lymph nodes. AGO immunoprecipitation was performed with a polyclonal antibody generated against an Argonaute 2 N-terminal peptide. 12 HITS-CLIP libraries from KO miR-155 CD4+ cells.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Location
Method
Result
Regulation
Valid. type
Source
chr2:76695671-76695696 (UNKNOWN)
In vitro activated CD4+ T cells from spleen and lymph nodes. AGO immunoprecipitation was performed with a polyclonal antibody generated against an Argonaute 2 N-terminal peptide. 12 HITS-CLIP libraries from WT CD4+ cells.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
chr2:76696660-76696685 (UNKNOWN)
In vitro activated CD4+ T cells from spleen and lymph nodes. AGO immunoprecipitation was performed with a polyclonal antibody generated against an Argonaute 2 N-terminal peptide. 12 HITS-CLIP libraries from WT CD4+ cells.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Location
Method
Result
Regulation
Valid. type
Source
chr2:76695671-76695696 (UNKNOWN)
2 libraries from Ago2-RN complex in C2C12 myoblasts. AGO immunoprecipitation with monoclonal anti-EIF2C2 antibody.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
chr2:76696104-76696127 (UNKNOWN)
2 libraries from Ago2-RN complex in C2C12 myotubes. AGO immunoprecipitation with monoclonal anti-EIF2C2 antibody.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
chr2:76696660-76696685 (UNKNOWN)
2 libraries from Ago2-RN complex in C2C12 myotubes. AGO immunoprecipitation with monoclonal anti-EIF2C2 antibody.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
chr17:53670980-53671001 (UNKNOWN)
In vitro activated CD4+ T cells from spleen and lymph nodes. AGO immunoprecipitation was performed with a polyclonal antibody generated against an Argonaute 2 N-terminal peptide. 12 HITS-CLIP libraries from WT CD4+ cells.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Location
Method
Result
Regulation
Valid. type
Source
chr17:53670980-53671001 (UNKNOWN)
In vitro activated CD4+ T cells from spleen and lymph nodes. AGO immunoprecipitation was performed with a polyclonal antibody generated against an Argonaute 2 N-terminal peptide. 12 HITS-CLIP libraries from KO miR-155 CD4+ cells.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Location
Method
Result
Regulation
Valid. type
Source
chr17:53670980-53671001 (UNKNOWN)
2 libraries from Ago2-RN complex in C2C12 myoblasts. AGO immunoprecipitation with monoclonal anti-EIF2C2 antibody.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
chr17:53670980-53671001 (UNKNOWN)
2 libraries from Ago2-RN complex in C2C12 myotubes. AGO immunoprecipitation with monoclonal anti-EIF2C2 antibody.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
chr14:30818364-30818387 (UNKNOWN)
2 libraries from Ago2-RN complex in C2C12 myoblasts. AGO immunoprecipitation with monoclonal anti-EIF2C2 antibody.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
chr14:30818364-30818387 (UNKNOWN)
2 libraries from Ago2-RN complex in C2C12 myotubes. AGO immunoprecipitation with monoclonal anti-EIF2C2 antibody.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
chr2:181582925-181582945 (UNKNOWN)
2 libraries from Ago2-RN complex in C2C12 myoblasts. AGO immunoprecipitation with monoclonal anti-EIF2C2 antibody.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
chr2:181583209-181583229 (UNKNOWN)
2 libraries from Ago2-RN complex in C2C12 myoblasts. AGO immunoprecipitation with monoclonal anti-EIF2C2 antibody.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
chr3:104794316-104794338 (UNKNOWN)
2 libraries from Ago2-RN complex in C2C12 myoblasts. AGO immunoprecipitation with monoclonal anti-EIF2C2 antibody.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
chr3:104794316-104794338 (UNKNOWN)
2 libraries from Ago2-RN complex in C2C12 myotubes. AGO immunoprecipitation with monoclonal anti-EIF2C2 antibody.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
chr3:142791659-142791687 (UNKNOWN)
In vitro activated CD4+ T cells from spleen and lymph nodes. AGO immunoprecipitation was performed with a polyclonal antibody generated against an Argonaute 2 N-terminal peptide. 12 HITS-CLIP libraries from KO miR-155 CD4+ cells.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Location
Method
Result
Regulation
Valid. type
Source
chr3:142791659-142791687 (UNKNOWN)
In vitro activated CD4+ T cells from spleen and lymph nodes. AGO immunoprecipitation was performed with a polyclonal antibody generated against an Argonaute 2 N-terminal peptide. 12 HITS-CLIP libraries from WT CD4+ cells.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Location
Method
Result
Regulation
Valid. type
Source
chr3:142791659-142791687 (UNKNOWN)
2 libraries from Ago2-RN complex in C2C12 myoblasts. AGO immunoprecipitation with monoclonal anti-EIF2C2 antibody.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
chr3:142791659-142791687 (UNKNOWN)
2 libraries from Ago2-RN complex in C2C12 myotubes. AGO immunoprecipitation with monoclonal anti-EIF2C2 antibody.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
chr8:3456148-3456175 (UNKNOWN)
In vitro activated CD4+ T cells from spleen and lymph nodes. AGO immunoprecipitation was performed with a polyclonal antibody generated against an Argonaute 2 N-terminal peptide. 12 HITS-CLIP libraries from KO miR-155 CD4+ cells.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Location
Method
Result
Regulation
Valid. type
Source
chr8:3456148-3456175 (UNKNOWN)
In vitro activated CD4+ T cells from spleen and lymph nodes. AGO immunoprecipitation was performed with a polyclonal antibody generated against an Argonaute 2 N-terminal peptide. 12 HITS-CLIP libraries from WT CD4+ cells.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Location
Method
Result
Regulation
Valid. type
Source
chr8:3456148-3456175 (UNKNOWN)
2 libraries from Ago2-RN complex in C2C12 myoblasts. AGO immunoprecipitation with monoclonal anti-EIF2C2 antibody.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
chr8:3456148-3456175 (UNKNOWN)
2 libraries from Ago2-RN complex in C2C12 myotubes. AGO immunoprecipitation with monoclonal anti-EIF2C2 antibody.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
chr6:92167994-92168018 (UNKNOWN)
In vitro activated CD4+ T cells from spleen and lymph nodes. AGO immunoprecipitation was performed with a polyclonal antibody generated against an Argonaute 2 N-terminal peptide. 12 HITS-CLIP libraries from KO miR-155 CD4+ cells.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Location
Method
Result
Regulation
Valid. type
Source
chr6:92167994-92168018 (UNKNOWN)
2 libraries from Ago2-RN complex in C2C12 myoblasts. AGO immunoprecipitation with monoclonal anti-EIF2C2 antibody.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
chr9:44803407-44803429 (UNKNOWN)
In vitro activated CD4+ T cells from spleen and lymph nodes. AGO immunoprecipitation was performed with a polyclonal antibody generated against an Argonaute 2 N-terminal peptide. 12 HITS-CLIP libraries from KO miR-155 CD4+ cells.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Location
Method
Result
Regulation
Valid. type
Source
chr9:44820267-44820290 (UNKNOWN)
2 libraries from Ago2-RN complex in C2C12 myoblasts. AGO immunoprecipitation with monoclonal anti-EIF2C2 antibody.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
chr9:44820474-44820499 (UNKNOWN)
2 libraries from Ago2-RN complex in C2C12 myoblasts. AGO immunoprecipitation with monoclonal anti-EIF2C2 antibody.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
chr9:44820474-44820499 (UNKNOWN)
2 libraries from Ago2-RN complex in C2C12 myotubes. AGO immunoprecipitation with monoclonal anti-EIF2C2 antibody.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
chr5:8966493-8966515 (UNKNOWN)
In vitro activated CD4+ T cells from spleen and lymph nodes. AGO immunoprecipitation was performed with a polyclonal antibody generated against an Argonaute 2 N-terminal peptide. 12 HITS-CLIP libraries from KO miR-155 CD4+ cells.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Location
Method
Result
Regulation
Valid. type
Source
chr5:8966493-8966515 (UNKNOWN)
In vitro activated CD4+ T cells from spleen and lymph nodes. AGO immunoprecipitation was performed with a polyclonal antibody generated against an Argonaute 2 N-terminal peptide. 12 HITS-CLIP libraries from WT CD4+ cells.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Location
Method
Result
Regulation
Valid. type
Source
chr5:8966493-8966515 (UNKNOWN)
8-10 week old male C57Bl/6 mice underwent partial hepatectomy using isofluorane anesthesia between 8 AM and noon, and livers were harvested at the indicated time points after partial hepatectomy. 2 biological replicates for the 48hr timepoint. HITS-CLIP was performed using the monoclonal argonaute antibody 2A8
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
chr5:8988216-8988235 (UNKNOWN)
8-10 week old male C57Bl/6 mice underwent partial hepatectomy using isofluorane anesthesia between 8 AM and noon, and livers were harvested at the indicated time points after partial hepatectomy. 2 biological replicates for the 48hr timepoint. HITS-CLIP was performed using the monoclonal argonaute antibody 2A8
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Location
Method
Result
Regulation
Valid. type
Source
chr5:8966493-8966515 (UNKNOWN)
8-10 week old male C57Bl/6 mice underwent partial hepatectomy using isofluorane anesthesia between 8 AM and noon, and livers were harvested at the indicated time points after partial hepatectomy. 2 biological replicates for the 1hr timepoint. HITS-CLIP was performed using the monoclonal argonaute antibody 2A8
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Location
Method
Result
Regulation
Valid. type
Source
chr5:8966493-8966515 (UNKNOWN)
8-10 week old male C57Bl/6 mice underwent partial hepatectomy using isofluorane anesthesia between 8 AM and noon, and livers were harvested at the indicated time points after partial hepatectomy. 2 biological replicates for the 36hr timepoint. HITS-CLIP was performed using the monoclonal argonaute antibody 2A8
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Location
Method
Result
Regulation
Valid. type
Source
chr5:8966493-8966515 (UNKNOWN)
2 libraries from Ago2-RN complex in C2C12 myoblasts. AGO immunoprecipitation with monoclonal anti-EIF2C2 antibody.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
chr5:8966493-8966515 (UNKNOWN)
2 libraries from Ago2-RN complex in C2C12 myotubes. AGO immunoprecipitation with monoclonal anti-EIF2C2 antibody.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
chr11:100888295-100888317 (UNKNOWN)
In vitro activated CD4+ T cells from spleen and lymph nodes. AGO immunoprecipitation was performed with a polyclonal antibody generated against an Argonaute 2 N-terminal peptide. 12 HITS-CLIP libraries from KO miR-155 CD4+ cells.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
chr11:100888542-100888568 (UNKNOWN)
In vitro activated CD4+ T cells from spleen and lymph nodes. AGO immunoprecipitation was performed with a polyclonal antibody generated against an Argonaute 2 N-terminal peptide. 12 HITS-CLIP libraries from KO miR-155 CD4+ cells.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
chr11:100905626-100905647 (UNKNOWN)
In vitro activated CD4+ T cells from spleen and lymph nodes. AGO immunoprecipitation was performed with a polyclonal antibody generated against an Argonaute 2 N-terminal peptide. 12 HITS-CLIP libraries from KO miR-155 CD4+ cells.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Location
Method
Result
Regulation
Valid. type
Source
chr11:100888295-100888317 (UNKNOWN)
In vitro activated CD4+ T cells from spleen and lymph nodes. AGO immunoprecipitation was performed with a polyclonal antibody generated against an Argonaute 2 N-terminal peptide. 12 HITS-CLIP libraries from WT CD4+ cells.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
chr11:100888542-100888568 (UNKNOWN)
In vitro activated CD4+ T cells from spleen and lymph nodes. AGO immunoprecipitation was performed with a polyclonal antibody generated against an Argonaute 2 N-terminal peptide. 12 HITS-CLIP libraries from WT CD4+ cells.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
chr11:100905626-100905647 (UNKNOWN)
In vitro activated CD4+ T cells from spleen and lymph nodes. AGO immunoprecipitation was performed with a polyclonal antibody generated against an Argonaute 2 N-terminal peptide. 12 HITS-CLIP libraries from WT CD4+ cells.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Location
Method
Result
Regulation
Valid. type
Source
chr11:100888542-100888568 (UNKNOWN)
2 libraries from Ago2-RN complex in C2C12 myoblasts. AGO immunoprecipitation with monoclonal anti-EIF2C2 antibody.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
chr11:100888604-100888625 (UNKNOWN)
2 libraries from Ago2-RN complex in C2C12 myotubes. AGO immunoprecipitation with monoclonal anti-EIF2C2 antibody.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
chr9:45968605-45968625 (UNKNOWN)
Dicer wild-type mESC CLIP library. For immunoprecipitation, anti-mouse Ago2 mAb (lot# PEM0820 Wako 2x100ul 018-22021) was used.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Location
Method
Result
Regulation
Valid. type
Source
chr9:45968605-45968625 (UNKNOWN)
In vitro activated CD4+ T cells from spleen and lymph nodes. AGO immunoprecipitation was performed with a polyclonal antibody generated against an Argonaute 2 N-terminal peptide. 12 HITS-CLIP libraries from WT CD4+ cells.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Location
Method
Result
Regulation
Valid. type
Source
chr9:45968605-45968625 (UNKNOWN)
In vitro activated CD4+ T cells from spleen and lymph nodes. AGO immunoprecipitation was performed with a polyclonal antibody generated against an Argonaute 2 N-terminal peptide. 12 HITS-CLIP libraries from KO miR-155 CD4+ cells.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
chr6:122844471-122844487 (UNKNOWN)
2 libraries from Ago2-RN complex in C2C12 myotubes. AGO immunoprecipitation with monoclonal anti-EIF2C2 antibody.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
chr7:25293939-25293967 (UNKNOWN)
Dicer wild-type mESC CLIP library. For immunoprecipitation, anti-mouse Ago2 mAb (lot# PEM0820 Wako 2x100ul 018-22021) was used.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
chr19:5702664-5702691 (UNKNOWN)
In vitro activated CD4+ T cells from spleen and lymph nodes. AGO immunoprecipitation was performed with a polyclonal antibody generated against an Argonaute 2 N-terminal peptide. 12 HITS-CLIP libraries from WT CD4+ cells.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Location
Method
Result
Regulation
Valid. type
Source
chr19:5702664-5702691 (UNKNOWN)
2 libraries from Ago2-RN complex in C2C12 myotubes. AGO immunoprecipitation with monoclonal anti-EIF2C2 antibody.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
chr10:94195974-94195996 (UNKNOWN)
2 libraries from Ago2-RN complex in C2C12 myotubes. AGO immunoprecipitation with monoclonal anti-EIF2C2 antibody.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
chr10:128631356-128631371 (UNKNOWN)
In vitro activated CD4+ T cells from spleen and lymph nodes. AGO immunoprecipitation was performed with a polyclonal antibody generated against an Argonaute 2 N-terminal peptide. 12 HITS-CLIP libraries from KO miR-155 CD4+ cells.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
chr10:128631641-128631662 (UNKNOWN)
In vitro activated CD4+ T cells from spleen and lymph nodes. AGO immunoprecipitation was performed with a polyclonal antibody generated against an Argonaute 2 N-terminal peptide. 12 HITS-CLIP libraries from KO miR-155 CD4+ cells.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Location
Method
Result
Regulation
Valid. type
Source
chr10:128631356-128631371 (UNKNOWN)
In vitro activated CD4+ T cells from spleen and lymph nodes. AGO immunoprecipitation was performed with a polyclonal antibody generated against an Argonaute 2 N-terminal peptide. 12 HITS-CLIP libraries from WT CD4+ cells.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
chr10:29227765-29227787 (UNKNOWN)
2 libraries from Ago2-RN complex in C2C12 myotubes. AGO immunoprecipitation with monoclonal anti-EIF2C2 antibody.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
chrX:74449255-74449281 (UNKNOWN)
2 libraries from Ago2-RN complex in C2C12 myotubes. AGO immunoprecipitation with monoclonal anti-EIF2C2 antibody.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
chr11:89037978-89037996 (UNKNOWN)
2 libraries from Ago2-RN complex in C2C12 myotubes. AGO immunoprecipitation with monoclonal anti-EIF2C2 antibody.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
chr6:127129339-127129364 (UNKNOWN)
In vitro activated CD4+ T cells from spleen and lymph nodes. AGO immunoprecipitation was performed with a polyclonal antibody generated against an Argonaute 2 N-terminal peptide. 12 HITS-CLIP libraries from KO miR-155 CD4+ cells.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
chr6:127129370-127129395 (UNKNOWN)
In vitro activated CD4+ T cells from spleen and lymph nodes. AGO immunoprecipitation was performed with a polyclonal antibody generated against an Argonaute 2 N-terminal peptide. 12 HITS-CLIP libraries from KO miR-155 CD4+ cells.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Location
Method
Result
Regulation
Valid. type
Source
chr6:127129370-127129395 (UNKNOWN)
In vitro activated CD4+ T cells from spleen and lymph nodes. AGO immunoprecipitation was performed with a polyclonal antibody generated against an Argonaute 2 N-terminal peptide. 12 HITS-CLIP libraries from WT CD4+ cells.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Location
Method
Result
Regulation
Valid. type
Source
chr6:127129370-127129395 (UNKNOWN)
2 libraries from Ago2-RN complex in C2C12 myotubes. AGO immunoprecipitation with monoclonal anti-EIF2C2 antibody.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
chr5:88753286-88753308 (UNKNOWN)
In vitro activated CD4+ T cells from spleen and lymph nodes. AGO immunoprecipitation was performed with a polyclonal antibody generated against an Argonaute 2 N-terminal peptide. 12 HITS-CLIP libraries from WT CD4+ cells.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
chr5:88756519-88756547 (UNKNOWN)
In vitro activated CD4+ T cells from spleen and lymph nodes. AGO immunoprecipitation was performed with a polyclonal antibody generated against an Argonaute 2 N-terminal peptide. 12 HITS-CLIP libraries from WT CD4+ cells.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Location
Method
Result
Regulation
Valid. type
Source
chr5:88757381-88757405 (UNKNOWN)
2 libraries from Ago2-RN complex in C2C12 myoblasts. AGO immunoprecipitation with monoclonal anti-EIF2C2 antibody.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
chr15:103314492-103314516 (UNKNOWN)
2 libraries from Ago2-RN complex in C2C12 myoblasts. AGO immunoprecipitation with monoclonal anti-EIF2C2 antibody.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
chr15:103314492-103314516 (UNKNOWN)
2 libraries from Ago2-RN complex in C2C12 myotubes. AGO immunoprecipitation with monoclonal anti-EIF2C2 antibody.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
chr13:58177458-58177480 (UNKNOWN)
2 libraries from Ago2-RN complex in C2C12 myotubes. AGO immunoprecipitation with monoclonal anti-EIF2C2 antibody.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
chr5:38526863-38526886 (UNKNOWN)
In vitro activated CD4+ T cells from spleen and lymph nodes. AGO immunoprecipitation was performed with a polyclonal antibody generated against an Argonaute 2 N-terminal peptide. 12 HITS-CLIP libraries from KO miR-155 CD4+ cells.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Location
Method
Result
Regulation
Valid. type
Source
chr5:38526863-38526886 (UNKNOWN)
In vitro activated CD4+ T cells from spleen and lymph nodes. AGO immunoprecipitation was performed with a polyclonal antibody generated against an Argonaute 2 N-terminal peptide. 12 HITS-CLIP libraries from WT CD4+ cells.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Location
Method
Result
Regulation
Valid. type
Source
chr5:38526863-38526886 (UNKNOWN)
2 libraries from Ago2-RN complex in C2C12 myoblasts. AGO immunoprecipitation with monoclonal anti-EIF2C2 antibody.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
chr5:38526863-38526886 (UNKNOWN)
2 libraries from Ago2-RN complex in C2C12 myotubes. AGO immunoprecipitation with monoclonal anti-EIF2C2 antibody.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
chr17:56067769-56067797 (UNKNOWN)
2 libraries from Ago2-RN complex in C2C12 myotubes. AGO immunoprecipitation with monoclonal anti-EIF2C2 antibody.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
chr3:138460071-138460095 (UNKNOWN)
2 libraries from Ago2-RN complex in C2C12 myotubes. AGO immunoprecipitation with monoclonal anti-EIF2C2 antibody.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
chr11:100371252-100371279 (UNKNOWN)
8-10 week old male C57Bl/6 mice underwent partial hepatectomy using isofluorane anesthesia between 8 AM and noon, and livers were harvested at the indicated time points after partial hepatectomy. 2 biological replicates for the 1hr timepoint. HITS-CLIP was performed using the monoclonal argonaute antibody 2A8
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
chr13:75770863-75770889 (UNKNOWN)
2 libraries from Ago2-RN complex in C2C12 myoblasts. AGO immunoprecipitation with monoclonal anti-EIF2C2 antibody.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
chr7:30569400-30569427 (UNKNOWN)
2 libraries from Ago2-RN complex in C2C12 myotubes. AGO immunoprecipitation with monoclonal anti-EIF2C2 antibody.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
chr11:97098097-97098119 (UNKNOWN)
In vitro activated CD4+ T cells from spleen and lymph nodes. AGO immunoprecipitation was performed with a polyclonal antibody generated against an Argonaute 2 N-terminal peptide. 12 HITS-CLIP libraries from WT CD4+ cells.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
chr6:39606600-39606620 (UNKNOWN)
2 libraries from Ago2-RN complex in C2C12 myotubes. AGO immunoprecipitation with monoclonal anti-EIF2C2 antibody.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
chr6:86649787-86649815 (UNKNOWN)
In vitro activated CD4+ T cells from spleen and lymph nodes. AGO immunoprecipitation was performed with a polyclonal antibody generated against an Argonaute 2 N-terminal peptide. 12 HITS-CLIP libraries from KO miR-155 CD4+ cells.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Location
Method
Result
Regulation
Valid. type
Source
chr6:86649787-86649815 (UNKNOWN)
In vitro activated CD4+ T cells from spleen and lymph nodes. AGO immunoprecipitation was performed with a polyclonal antibody generated against an Argonaute 2 N-terminal peptide. 12 HITS-CLIP libraries from WT CD4+ cells.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Location
Method
Result
Regulation
Valid. type
Source
chr6:86648170-86648195 (UNKNOWN)
2 libraries from Ago2-RN complex in C2C12 myotubes. AGO immunoprecipitation with monoclonal anti-EIF2C2 antibody.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
chr15:8634164-8634191 (UNKNOWN)
2 libraries from Ago2-RN complex in C2C12 myoblasts. AGO immunoprecipitation with monoclonal anti-EIF2C2 antibody.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
chr8:3153304-3153323 (UNKNOWN)
In vitro activated CD4+ T cells from spleen and lymph nodes. AGO immunoprecipitation was performed with a polyclonal antibody generated against an Argonaute 2 N-terminal peptide. 12 HITS-CLIP libraries from KO miR-155 CD4+ cells.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
chr8:3153499-3153522 (UNKNOWN)
In vitro activated CD4+ T cells from spleen and lymph nodes. AGO immunoprecipitation was performed with a polyclonal antibody generated against an Argonaute 2 N-terminal peptide. 12 HITS-CLIP libraries from KO miR-155 CD4+ cells.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
chr8:3154068-3154093 (UNKNOWN)
In vitro activated CD4+ T cells from spleen and lymph nodes. AGO immunoprecipitation was performed with a polyclonal antibody generated against an Argonaute 2 N-terminal peptide. 12 HITS-CLIP libraries from KO miR-155 CD4+ cells.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Location
Method
Result
Regulation
Valid. type
Source
chr8:3153304-3153323 (UNKNOWN)
In vitro activated CD4+ T cells from spleen and lymph nodes. AGO immunoprecipitation was performed with a polyclonal antibody generated against an Argonaute 2 N-terminal peptide. 12 HITS-CLIP libraries from WT CD4+ cells.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
chr8:3153499-3153522 (UNKNOWN)
In vitro activated CD4+ T cells from spleen and lymph nodes. AGO immunoprecipitation was performed with a polyclonal antibody generated against an Argonaute 2 N-terminal peptide. 12 HITS-CLIP libraries from WT CD4+ cells.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
chr8:3154068-3154093 (UNKNOWN)
In vitro activated CD4+ T cells from spleen and lymph nodes. AGO immunoprecipitation was performed with a polyclonal antibody generated against an Argonaute 2 N-terminal peptide. 12 HITS-CLIP libraries from WT CD4+ cells.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
chr8:3154131-3154159 (UNKNOWN)
In vitro activated CD4+ T cells from spleen and lymph nodes. AGO immunoprecipitation was performed with a polyclonal antibody generated against an Argonaute 2 N-terminal peptide. 12 HITS-CLIP libraries from WT CD4+ cells.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Location
Method
Result
Regulation
Valid. type
Source
chr8:3153499-3153522 (UNKNOWN)
2 libraries from Ago2-RN complex in C2C12 myoblasts. AGO immunoprecipitation with monoclonal anti-EIF2C2 antibody.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
chr8:3153499-3153522 (UNKNOWN)
2 libraries from Ago2-RN complex in C2C12 myotubes. AGO immunoprecipitation with monoclonal anti-EIF2C2 antibody.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
chr8:3154131-3154159 (UNKNOWN)
2 libraries from Ago2-RN complex in C2C12 myoblasts. AGO immunoprecipitation with monoclonal anti-EIF2C2 antibody.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
chr11:112784038-112784059 (UNKNOWN)
8-10 week old male C57Bl/6 mice underwent partial hepatectomy using isofluorane anesthesia between 8 AM and noon, and livers were harvested at the indicated time points after partial hepatectomy. 2 biological replicates for the 48hr timepoint. HITS-CLIP was performed using the monoclonal argonaute antibody 2A8
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
chr15:102433044-102433065 (UNKNOWN)
In vitro activated CD4+ T cells from spleen and lymph nodes. AGO immunoprecipitation was performed with a polyclonal antibody generated against an Argonaute 2 N-terminal peptide. 12 HITS-CLIP libraries from KO miR-155 CD4+ cells.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Location
Method
Result
Regulation
Valid. type
Source
chr15:102433044-102433065 (UNKNOWN)
In vitro activated CD4+ T cells from spleen and lymph nodes. AGO immunoprecipitation was performed with a polyclonal antibody generated against an Argonaute 2 N-terminal peptide. 12 HITS-CLIP libraries from WT CD4+ cells.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
chr15:66929323-66929345 (UNKNOWN)
2 libraries from Ago2-RN complex in C2C12 myotubes. AGO immunoprecipitation with monoclonal anti-EIF2C2 antibody.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
chr15:79996015-79996042 (UNKNOWN)
2 libraries from Ago2-RN complex in C2C12 myotubes. AGO immunoprecipitation with monoclonal anti-EIF2C2 antibody.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
chr8:75100342-75100370 (UNKNOWN)
8-10 week old male C57Bl/6 mice. 2 biological replicates for quiescent liver. HITS-CLIP was performed using the monoclonal argonaute antibody 2A8
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
chr8:84250511-84250532 (UNKNOWN)
2 libraries from Ago2-RN complex in C2C12 myoblasts. AGO immunoprecipitation with monoclonal anti-EIF2C2 antibody.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
chr10:58480527-58480547 (UNKNOWN)
In vitro activated CD4+ T cells from spleen and lymph nodes. AGO immunoprecipitation was performed with a polyclonal antibody generated against an Argonaute 2 N-terminal peptide. 12 HITS-CLIP libraries from KO miR-155 CD4+ cells.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Location
Method
Result
Regulation
Valid. type
Source
chr10:58455887-58455914 (UNKNOWN)
In vitro activated CD4+ T cells from spleen and lymph nodes. AGO immunoprecipitation was performed with a polyclonal antibody generated against an Argonaute 2 N-terminal peptide. 12 HITS-CLIP libraries from WT CD4+ cells.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Location
Method
Result
Regulation
Valid. type
Source
chr10:58480123-58480146 (UNKNOWN)
8-10 week old male C57Bl/6 mice underwent partial hepatectomy using isofluorane anesthesia between 8 AM and noon, and livers were harvested at the indicated time points after partial hepatectomy. 2 biological replicates for the 1hr timepoint. HITS-CLIP was performed using the monoclonal argonaute antibody 2A8
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Location
Method
Result
Regulation
Valid. type
Source
chr10:58480123-58480146 (UNKNOWN)
8-10 week old male C57Bl/6 mice. 2 biological replicates for quiescent liver. HITS-CLIP was performed using the monoclonal argonaute antibody 2A8
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Location
Method
Result
Regulation
Valid. type
Source
chr10:58476938-58476958 (UNKNOWN)
2 libraries from Ago2-RN complex in C2C12 myoblasts. AGO immunoprecipitation with monoclonal anti-EIF2C2 antibody.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
chr6:146777551-146777568 (UNKNOWN)
2 libraries from Ago2-RN complex in C2C12 myotubes. AGO immunoprecipitation with monoclonal anti-EIF2C2 antibody.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
chr18:6201947-6201972 (UNKNOWN)
2 libraries from Ago2-RN complex in C2C12 myoblasts. AGO immunoprecipitation with monoclonal anti-EIF2C2 antibody.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
chr18:6201947-6201972 (UNKNOWN)
2 libraries from Ago2-RN complex in C2C12 myotubes. AGO immunoprecipitation with monoclonal anti-EIF2C2 antibody.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
chr11:6596095-6596122 (UNKNOWN)
2 libraries from Ago2-RN complex in C2C12 myoblasts. AGO immunoprecipitation with monoclonal anti-EIF2C2 antibody.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Coro1c (mmu)
mmu-miR-20b-5p
-
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
chr5:113843845-113843869 (UNKNOWN)
2 libraries from Ago2-RN complex in C2C12 myotubes. AGO immunoprecipitation with monoclonal anti-EIF2C2 antibody.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Irf9 (mmu)
mmu-miR-20b-5p
-
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
chr14:55609363-55609385 (UNKNOWN)
In vitro activated CD4+ T cells from spleen and lymph nodes. AGO immunoprecipitation was performed with a polyclonal antibody generated against an Argonaute 2 N-terminal peptide. 12 HITS-CLIP libraries from WT CD4+ cells.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Location
Method
Result
Regulation
Valid. type
Source
chr14:55609363-55609385 (UNKNOWN)
In vitro activated CD4+ T cells from spleen and lymph nodes. AGO immunoprecipitation was performed with a polyclonal antibody generated against an Argonaute 2 N-terminal peptide. 12 HITS-CLIP libraries from KO miR-155 CD4+ cells.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Celf2 (mmu)
mmu-miR-20b-5p
-
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
chr2:6544357-6544378 (UNKNOWN)
In vitro activated CD4+ T cells from spleen and lymph nodes. AGO immunoprecipitation was performed with a polyclonal antibody generated against an Argonaute 2 N-terminal peptide. 12 HITS-CLIP libraries from KO miR-155 CD4+ cells.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Location
Method
Result
Regulation
Valid. type
Source
chr2:6544357-6544378 (UNKNOWN)
In vitro activated CD4+ T cells from spleen and lymph nodes. AGO immunoprecipitation was performed with a polyclonal antibody generated against an Argonaute 2 N-terminal peptide. 12 HITS-CLIP libraries from WT CD4+ cells.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Eif4g2 (mmu)
mmu-miR-20b-5p
-
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
chr7:111072324-111072352 (UNKNOWN)
In vitro activated CD4+ T cells from spleen and lymph nodes. AGO immunoprecipitation was performed with a polyclonal antibody generated against an Argonaute 2 N-terminal peptide. 12 HITS-CLIP libraries from KO miR-155 CD4+ cells.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Location
Method
Result
Regulation
Valid. type
Source
chr7:111072324-111072352 (UNKNOWN)
In vitro activated CD4+ T cells from spleen and lymph nodes. AGO immunoprecipitation was performed with a polyclonal antibody generated against an Argonaute 2 N-terminal peptide. 12 HITS-CLIP libraries from WT CD4+ cells.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Location
Method
Result
Regulation
Valid. type
Source
chr7:111072324-111072352 (UNKNOWN)
8-10 week old male C57Bl/6 mice underwent partial hepatectomy using isofluorane anesthesia between 8 AM and noon, and livers were harvested at the indicated time points after partial hepatectomy. 2 biological replicates for the 36hr timepoint. HITS-CLIP was performed using the monoclonal argonaute antibody 2A8
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Location
Method
Result
Regulation
Valid. type
Source
chr7:111072324-111072352 (UNKNOWN)
8-10 week old male C57Bl/6 mice underwent partial hepatectomy using isofluorane anesthesia between 8 AM and noon, and livers were harvested at the indicated time points after partial hepatectomy. 2 biological replicates for the 48hr timepoint. HITS-CLIP was performed using the monoclonal argonaute antibody 2A8
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Il16 (mmu)
mmu-miR-20b-5p
-
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
chr7:83652682-83652701 (UNKNOWN)
In vitro activated CD4+ T cells from spleen and lymph nodes. AGO immunoprecipitation was performed with a polyclonal antibody generated against an Argonaute 2 N-terminal peptide. 12 HITS-CLIP libraries from KO miR-155 CD4+ cells.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Xpo6 (mmu)
mmu-miR-20b-5p
-
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
chr7:126115861-126115877 (UNKNOWN)
2 libraries from Ago2-RN complex in C2C12 myoblasts. AGO immunoprecipitation with monoclonal anti-EIF2C2 antibody.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
chr7:126153091-126153117 (UNKNOWN)
2 libraries from Ago2-RN complex in C2C12 myotubes. AGO immunoprecipitation with monoclonal anti-EIF2C2 antibody.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Nfat5 (mmu)
mmu-miR-20b-5p
-
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
chr8:107377098-107377125 (UNKNOWN)
In vitro activated CD4+ T cells from spleen and lymph nodes. AGO immunoprecipitation was performed with a polyclonal antibody generated against an Argonaute 2 N-terminal peptide. 12 HITS-CLIP libraries from KO miR-155 CD4+ cells.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Location
Method
Result
Regulation
Valid. type
Source
chr8:107377098-107377125 (UNKNOWN)
In vitro activated CD4+ T cells from spleen and lymph nodes. AGO immunoprecipitation was performed with a polyclonal antibody generated against an Argonaute 2 N-terminal peptide. 12 HITS-CLIP libraries from WT CD4+ cells.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Stat3 (mmu)
mmu-miR-20b-5p
-
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
chr11:100889543-100889569 (UNKNOWN)
In vitro activated CD4+ T cells from spleen and lymph nodes. AGO immunoprecipitation was performed with a polyclonal antibody generated against an Argonaute 2 N-terminal peptide. 12 HITS-CLIP libraries from KO miR-155 CD4+ cells.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Location
Method
Result
Regulation
Valid. type
Source
chr11:100889543-100889569 (UNKNOWN)
In vitro activated CD4+ T cells from spleen and lymph nodes. AGO immunoprecipitation was performed with a polyclonal antibody generated against an Argonaute 2 N-terminal peptide. 12 HITS-CLIP libraries from WT CD4+ cells.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Fmr1 (mmu)
mmu-miR-20b-5p
-
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
chrX:68715723-68715748 (UNKNOWN)
2 libraries from Ago2-RN complex in C2C12 myoblasts. AGO immunoprecipitation with monoclonal anti-EIF2C2 antibody.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Pknox1 (mmu)
mmu-miR-20b-5p
-
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
chr17:31605054-31605081 (UNKNOWN)
2 libraries from Ago2-RN complex in C2C12 myoblasts. AGO immunoprecipitation with monoclonal anti-EIF2C2 antibody.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Cp (mmu)
mmu-miR-20b-5p
-
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
chr3:19993066-19993083 (UNKNOWN)
8-10 week old male C57Bl/6 mice underwent partial hepatectomy using isofluorane anesthesia between 8 AM and noon, and livers were harvested at the indicated time points after partial hepatectomy. 2 biological replicates for the 36hr timepoint. HITS-CLIP was performed using the monoclonal argonaute antibody 2A8
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Impdh1 (mmu)
mmu-miR-20b-5p
-
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
chr6:29200497-29200518 (UNKNOWN)
In vitro activated CD4+ T cells from spleen and lymph nodes. AGO immunoprecipitation was performed with a polyclonal antibody generated against an Argonaute 2 N-terminal peptide. 12 HITS-CLIP libraries from KO miR-155 CD4+ cells.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Location
Method
Result
Regulation
Valid. type
Source
chr6:29200506-29200533 (UNKNOWN)
In vitro activated CD4+ T cells from spleen and lymph nodes. AGO immunoprecipitation was performed with a polyclonal antibody generated against an Argonaute 2 N-terminal peptide. 12 HITS-CLIP libraries from WT CD4+ cells.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Gtf2h4 (mmu)
mmu-miR-20b-5p
-
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
chr17:35667964-35667986 (UNKNOWN)
8-10 week old male C57Bl/6 mice. 2 biological replicates for quiescent liver. HITS-CLIP was performed using the monoclonal argonaute antibody 2A8
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Myo9b (mmu)
mmu-miR-20b-5p
-
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
chr8:71347711-71347731 (UNKNOWN)
2 libraries from Ago2-RN complex in C2C12 myotubes. AGO immunoprecipitation with monoclonal anti-EIF2C2 antibody.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Hbp1 (mmu)
mmu-miR-20b-5p
-
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
chr12:31926670-31926693 (UNKNOWN)
In vitro activated CD4+ T cells from spleen and lymph nodes. AGO immunoprecipitation was performed with a polyclonal antibody generated against an Argonaute 2 N-terminal peptide. 12 HITS-CLIP libraries from WT CD4+ cells.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Location
Method
Result
Regulation
Valid. type
Source
chr12:31926670-31926693 (UNKNOWN)
8-10 week old male C57Bl/6 mice. 2 biological replicates for quiescent liver. HITS-CLIP was performed using the monoclonal argonaute antibody 2A8
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Usp19 (mmu)
mmu-miR-20b-5p
-
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
chr9:108496838-108496865 (UNKNOWN)
2 libraries from Ago2-RN complex in C2C12 myoblasts. AGO immunoprecipitation with monoclonal anti-EIF2C2 antibody.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Tcirg1 (mmu)
mmu-miR-20b-5p
-
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
chr19:3897674-3897701 (UNKNOWN)
2 libraries from Ago2-RN complex in C2C12 myoblasts. AGO immunoprecipitation with monoclonal anti-EIF2C2 antibody.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Cd247 (mmu)
mmu-miR-20b-5p
-
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
chr1:165862035-165862059 (UNKNOWN)
In vitro activated CD4+ T cells from spleen and lymph nodes. AGO immunoprecipitation was performed with a polyclonal antibody generated against an Argonaute 2 N-terminal peptide. 12 HITS-CLIP libraries from WT CD4+ cells.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Location
Method
Result
Regulation
Valid. type
Source
chr1:165862035-165862059 (UNKNOWN)
In vitro activated CD4+ T cells from spleen and lymph nodes. AGO immunoprecipitation was performed with a polyclonal antibody generated against an Argonaute 2 N-terminal peptide. 12 HITS-CLIP libraries from KO miR-155 CD4+ cells.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Crbn (mmu)
mmu-miR-20b-5p
-
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
chr6:106780433-106780460 (UNKNOWN)
In vitro activated CD4+ T cells from spleen and lymph nodes. AGO immunoprecipitation was performed with a polyclonal antibody generated against an Argonaute 2 N-terminal peptide. 12 HITS-CLIP libraries from WT CD4+ cells.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Location
Method
Result
Regulation
Valid. type
Source
chr6:106780433-106780460 (UNKNOWN)
In vitro activated CD4+ T cells from spleen and lymph nodes. AGO immunoprecipitation was performed with a polyclonal antibody generated against an Argonaute 2 N-terminal peptide. 12 HITS-CLIP libraries from KO miR-155 CD4+ cells.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Location
Method
Result
Regulation
Valid. type
Source
chr6:106780433-106780460 (UNKNOWN)
2 libraries from Ago2-RN complex in C2C12 myotubes. AGO immunoprecipitation with monoclonal anti-EIF2C2 antibody.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Luzp1 (mmu)
mmu-miR-20b-5p
-
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
chr4:136546373-136546400 (UNKNOWN)
8-10 week old male C57Bl/6 mice underwent partial hepatectomy using isofluorane anesthesia between 8 AM and noon, and livers were harvested at the indicated time points after partial hepatectomy. 2 biological replicates for the 48hr timepoint. HITS-CLIP was performed using the monoclonal argonaute antibody 2A8
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Galnt1 (mmu)
mmu-miR-20b-5p
-
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
chr18:24286803-24286810 (UNKNOWN)
2 libraries from Ago2-RN complex in C2C12 myotubes. AGO immunoprecipitation with monoclonal anti-EIF2C2 antibody.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Gmnn (mmu)
mmu-miR-20b-5p
-
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
chr13:24751911-24751935 (UNKNOWN)
In vitro activated CD4+ T cells from spleen and lymph nodes. AGO immunoprecipitation was performed with a polyclonal antibody generated against an Argonaute 2 N-terminal peptide. 12 HITS-CLIP libraries from KO miR-155 CD4+ cells.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Location
Method
Result
Regulation
Valid. type
Source
chr13:24751911-24751935 (UNKNOWN)
In vitro activated CD4+ T cells from spleen and lymph nodes. AGO immunoprecipitation was performed with a polyclonal antibody generated against an Argonaute 2 N-terminal peptide. 12 HITS-CLIP libraries from WT CD4+ cells.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Snd1 (mmu)
mmu-miR-20b-5p
-
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
chr6:28526155-28526183 (UNKNOWN)
8-10 week old male C57Bl/6 mice underwent partial hepatectomy using isofluorane anesthesia between 8 AM and noon, and livers were harvested at the indicated time points after partial hepatectomy. 2 biological replicates for the 1hr timepoint. HITS-CLIP was performed using the monoclonal argonaute antibody 2A8
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Ufd1l (mmu)
mmu-miR-20b-5p
-
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
chr16:18827657-18827677 (UNKNOWN)
2 libraries from Ago2-RN complex in C2C12 myoblasts. AGO immunoprecipitation with monoclonal anti-EIF2C2 antibody.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Pex6 (mmu)
mmu-miR-20b-5p
-
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
chr17:46714041-46714060 (UNKNOWN)
2 libraries from Ago2-RN complex in C2C12 myotubes. AGO immunoprecipitation with monoclonal anti-EIF2C2 antibody.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Slc2a3 (mmu)
mmu-miR-20b-5p
-
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
chr6:122728575-122728598 (UNKNOWN)
In vitro activated CD4+ T cells from spleen and lymph nodes. AGO immunoprecipitation was performed with a polyclonal antibody generated against an Argonaute 2 N-terminal peptide. 12 HITS-CLIP libraries from KO miR-155 CD4+ cells.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Location
Method
Result
Regulation
Valid. type
Source
chr6:122728575-122728598 (UNKNOWN)
In vitro activated CD4+ T cells from spleen and lymph nodes. AGO immunoprecipitation was performed with a polyclonal antibody generated against an Argonaute 2 N-terminal peptide. 12 HITS-CLIP libraries from WT CD4+ cells.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Rsl1d1 (mmu)
mmu-miR-20b-5p
-
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
chr16:11193254-11193279 (UNKNOWN)
2 libraries from Ago2-RN complex in C2C12 myoblasts. AGO immunoprecipitation with monoclonal anti-EIF2C2 antibody.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Ap2a2 (mmu)
mmu-miR-20b-5p
-
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
chr7:141609828-141609855 (UNKNOWN)
2 libraries from Ago2-RN complex in C2C12 myoblasts. AGO immunoprecipitation with monoclonal anti-EIF2C2 antibody.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Usp32 (mmu)
mmu-miR-20b-5p
-
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
chr11:84985202-84985225 (UNKNOWN)
2 libraries from Ago2-RN complex in C2C12 myoblasts. AGO immunoprecipitation with monoclonal anti-EIF2C2 antibody.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
chr11:84985494-84985513 (UNKNOWN)
2 libraries from Ago2-RN complex in C2C12 myotubes. AGO immunoprecipitation with monoclonal anti-EIF2C2 antibody.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Mdp1 (mmu)
mmu-miR-20b-5p
-
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
chr14:55659434-55659457 (UNKNOWN)
2 libraries from Ago2-RN complex in C2C12 myotubes. AGO immunoprecipitation with monoclonal anti-EIF2C2 antibody.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Sync (mmu)
mmu-miR-20b-5p
-
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
chr4:129294071-129294094 (UNKNOWN)
2 libraries from Ago2-RN complex in C2C12 myotubes. AGO immunoprecipitation with monoclonal anti-EIF2C2 antibody.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Araf (mmu)
mmu-miR-20b-5p
-
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
chrX:20852416-20852435 (UNKNOWN)
2 libraries from Ago2-RN complex in C2C12 myoblasts. AGO immunoprecipitation with monoclonal anti-EIF2C2 antibody.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Supt6 (mmu)
mmu-miR-20b-5p
-
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
chr11:78213327-78213355 (UNKNOWN)
2 libraries from Ago2-RN complex in C2C12 myoblasts. AGO immunoprecipitation with monoclonal anti-EIF2C2 antibody.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Cdk4 (mmu)
mmu-miR-20b-5p
-
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
chr10:127064308-127064329 (UNKNOWN)
2 libraries from Ago2-RN complex in C2C12 myotubes. AGO immunoprecipitation with monoclonal anti-EIF2C2 antibody.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Cdkn1b (mmu)
mmu-miR-20b-5p
-
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
chr6:134923414-134923430 (UNKNOWN)
2 libraries from Ago2-RN complex in C2C12 myoblasts. AGO immunoprecipitation with monoclonal anti-EIF2C2 antibody.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
chr6:134923414-134923430 (UNKNOWN)
2 libraries from Ago2-RN complex in C2C12 myotubes. AGO immunoprecipitation with monoclonal anti-EIF2C2 antibody.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Polr2a (mmu)
mmu-miR-20b-5p
-
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
chr11:69739984-69740011 (UNKNOWN)
In vitro activated CD4+ T cells from spleen and lymph nodes. AGO immunoprecipitation was performed with a polyclonal antibody generated against an Argonaute 2 N-terminal peptide. 12 HITS-CLIP libraries from KO miR-155 CD4+ cells.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Rad23a (mmu)
mmu-miR-20b-5p
-
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
chr8:84835572-84835600 (UNKNOWN)
2 libraries from Ago2-RN complex in C2C12 myoblasts. AGO immunoprecipitation with monoclonal anti-EIF2C2 antibody.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Ctr9 (mmu)
mmu-miR-20b-5p
-
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
chr7:111034403-111034426 (UNKNOWN)
In vitro activated CD4+ T cells from spleen and lymph nodes. AGO immunoprecipitation was performed with a polyclonal antibody generated against an Argonaute 2 N-terminal peptide. 12 HITS-CLIP libraries from KO miR-155 CD4+ cells.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Location
Method
Result
Regulation
Valid. type
Source
chr7:111034403-111034426 (UNKNOWN)
In vitro activated CD4+ T cells from spleen and lymph nodes. AGO immunoprecipitation was performed with a polyclonal antibody generated against an Argonaute 2 N-terminal peptide. 12 HITS-CLIP libraries from WT CD4+ cells.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Ndrg2 (mmu)
mmu-miR-20b-5p
-
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
chr14:51910748-51910770 (UNKNOWN)
In vitro activated CD4+ T cells from spleen and lymph nodes. AGO immunoprecipitation was performed with a polyclonal antibody generated against an Argonaute 2 N-terminal peptide. 12 HITS-CLIP libraries from WT CD4+ cells.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Abcf3 (mmu)
mmu-miR-20b-5p
-
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
chr16:20550284-20550305 (UNKNOWN)
2 libraries from Ago2-RN complex in C2C12 myoblasts. AGO immunoprecipitation with monoclonal anti-EIF2C2 antibody.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Tbl2 (mmu)
mmu-miR-20b-5p
-
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
chr5:135161448-135161470 (UNKNOWN)
2 libraries from Ago2-RN complex in C2C12 myoblasts. AGO immunoprecipitation with monoclonal anti-EIF2C2 antibody.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Klf4 (mmu)
mmu-miR-20b-5p
-
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
chr4:55528128-55528155 (UNKNOWN)
2 libraries from Ago2-RN complex in C2C12 myotubes. AGO immunoprecipitation with monoclonal anti-EIF2C2 antibody.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Ccne1 (mmu)
mmu-miR-20b-5p
-
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
chr7:38100602-38100608 (UNKNOWN)
In vitro activated CD4+ T cells from spleen and lymph nodes. AGO immunoprecipitation was performed with a polyclonal antibody generated against an Argonaute 2 N-terminal peptide. 12 HITS-CLIP libraries from WT CD4+ cells.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Location
Method
Result
Regulation
Valid. type
Source
chr7:38100602-38100608 (UNKNOWN)
In vitro activated CD4+ T cells from spleen and lymph nodes. AGO immunoprecipitation was performed with a polyclonal antibody generated against an Argonaute 2 N-terminal peptide. 12 HITS-CLIP libraries from KO miR-155 CD4+ cells.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Mast2 (mmu)
mmu-miR-20b-5p
-
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
chr4:116307317-116307340 (UNKNOWN)
2 libraries from Ago2-RN complex in C2C12 myoblasts. AGO immunoprecipitation with monoclonal anti-EIF2C2 antibody.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
chr4:116307566-116307585 (UNKNOWN)
2 libraries from Ago2-RN complex in C2C12 myotubes. AGO immunoprecipitation with monoclonal anti-EIF2C2 antibody.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Tmem110 (mmu)
mmu-miR-20b-5p
-
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
chr14:30864450-30864478 (UNKNOWN)
2 libraries from Ago2-RN complex in C2C12 myoblasts. AGO immunoprecipitation with monoclonal anti-EIF2C2 antibody.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Akt1 (mmu)
mmu-miR-20b-5p
-
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
chr12:112653879-112653905 (UNKNOWN)
2 libraries from Ago2-RN complex in C2C12 myoblasts. AGO immunoprecipitation with monoclonal anti-EIF2C2 antibody.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
chr12:112653879-112653905 (UNKNOWN)
2 libraries from Ago2-RN complex in C2C12 myotubes. AGO immunoprecipitation with monoclonal anti-EIF2C2 antibody.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Gramd1a (mmu)
mmu-miR-20b-5p
-
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
chr7:31130323-31130346 (UNKNOWN)
In vitro activated CD4+ T cells from spleen and lymph nodes. AGO immunoprecipitation was performed with a polyclonal antibody generated against an Argonaute 2 N-terminal peptide. 12 HITS-CLIP libraries from WT CD4+ cells.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Location
Method
Result
Regulation
Valid. type
Source
chr7:31130323-31130346 (UNKNOWN)
In vitro activated CD4+ T cells from spleen and lymph nodes. AGO immunoprecipitation was performed with a polyclonal antibody generated against an Argonaute 2 N-terminal peptide. 12 HITS-CLIP libraries from KO miR-155 CD4+ cells.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Dnajb11 (mmu)
mmu-miR-20b-5p
-
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
chr16:22871729-22871757 (UNKNOWN)
8-10 week old male C57Bl/6 mice. 2 biological replicates for quiescent liver. HITS-CLIP was performed using the monoclonal argonaute antibody 2A8
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Sdhd (mmu)
mmu-miR-20b-5p
-
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
chr9:50597067-50597089 (UNKNOWN)
2 libraries from Ago2-RN complex in C2C12 myotubes. AGO immunoprecipitation with monoclonal anti-EIF2C2 antibody.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Clint1 (mmu)
mmu-miR-20b-5p
-
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
chr11:45886516-45886536 (UNKNOWN)
In vitro activated CD4+ T cells from spleen and lymph nodes. AGO immunoprecipitation was performed with a polyclonal antibody generated against an Argonaute 2 N-terminal peptide. 12 HITS-CLIP libraries from WT CD4+ cells.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Gna12 (mmu)
mmu-miR-20b-5p
-
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
chr5:140758789-140758817 (UNKNOWN)
2 libraries from Ago2-RN complex in C2C12 myotubes. AGO immunoprecipitation with monoclonal anti-EIF2C2 antibody.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Dnajc5 (mmu)
mmu-miR-20b-5p
-
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
chr2:181547480-181547503 (UNKNOWN)
2 libraries from Ago2-RN complex in C2C12 myoblasts. AGO immunoprecipitation with monoclonal anti-EIF2C2 antibody.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Itih3 (mmu)
mmu-miR-20b-5p
-
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
chr14:30921282-30921308 (UNKNOWN)
8-10 week old male C57Bl/6 mice underwent partial hepatectomy using isofluorane anesthesia between 8 AM and noon, and livers were harvested at the indicated time points after partial hepatectomy. 2 biological replicates for the 1hr timepoint. HITS-CLIP was performed using the monoclonal argonaute antibody 2A8
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Dnase2a (mmu)
mmu-miR-20b-5p
-
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
chr8:84911089-84911111 (UNKNOWN)
2 libraries from Ago2-RN complex in C2C12 myoblasts. AGO immunoprecipitation with monoclonal anti-EIF2C2 antibody.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Ugp2 (mmu)
mmu-miR-20b-5p
-
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
chr11:21321998-21322017 (UNKNOWN)
In vitro activated CD4+ T cells from spleen and lymph nodes. AGO immunoprecipitation was performed with a polyclonal antibody generated against an Argonaute 2 N-terminal peptide. 12 HITS-CLIP libraries from WT CD4+ cells.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
chr11:21322010-21322035 (UNKNOWN)
In vitro activated CD4+ T cells from spleen and lymph nodes. AGO immunoprecipitation was performed with a polyclonal antibody generated against an Argonaute 2 N-terminal peptide. 12 HITS-CLIP libraries from WT CD4+ cells.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0