Deprecated!
This application is deprecated. Please use the latest version of the tool here.
Please cite:
I. S. Vlachos, M. D. Paraskevopoulou, D. Karagkouni, G. Georgakilas, T. Vergoulis, I. Kanellos, I-L. Anastasopoulos, S. Maniou, K. Karathanou, D. Kalfakakou, A. Fevgas, T. Dalamagas and A. G. Hatzigeorgiou. DIANA-TarBase v7.0: indexing more than half a million experimentally supported miRNA:mRNA interactions. Nucl. Acids Res. (2014)
Data Download:
DIANA-TarBase v7 is available for scientific non-profit and non-commercial use! Download TarBase v7 by following this link
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Species
Method Type
Method
Regulation type
Validation type
Validated as
Source
Publication year
Prediction score
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Gene name
miRNA name
Methods
Pred.Score
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
chr5:148505177-148505191 (UNKNOWN)
In vitro activated CD4+ T cells from spleen and lymph nodes. AGO immunoprecipitation was performed with a polyclonal antibody generated against an Argonaute 2 N-terminal peptide. 12 HITS-CLIP libraries from KO miR-155 CD4+ cells.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
chr5:148505804-148505827 (UNKNOWN)
In vitro activated CD4+ T cells from spleen and lymph nodes. AGO immunoprecipitation was performed with a polyclonal antibody generated against an Argonaute 2 N-terminal peptide. 12 HITS-CLIP libraries from KO miR-155 CD4+ cells.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Location
Method
Result
Regulation
Valid. type
Source
chr5:148505177-148505191 (UNKNOWN)
In vitro activated CD4+ T cells from spleen and lymph nodes. AGO immunoprecipitation was performed with a polyclonal antibody generated against an Argonaute 2 N-terminal peptide. 12 HITS-CLIP libraries from WT CD4+ cells.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
chr5:148505804-148505827 (UNKNOWN)
In vitro activated CD4+ T cells from spleen and lymph nodes. AGO immunoprecipitation was performed with a polyclonal antibody generated against an Argonaute 2 N-terminal peptide. 12 HITS-CLIP libraries from WT CD4+ cells.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
chr5:148505917-148505942 (UNKNOWN)
In vitro activated CD4+ T cells from spleen and lymph nodes. AGO immunoprecipitation was performed with a polyclonal antibody generated against an Argonaute 2 N-terminal peptide. 12 HITS-CLIP libraries from WT CD4+ cells.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Location
Method
Result
Regulation
Valid. type
Source
chr5:148505177-148505191 (UNKNOWN)
2 libraries from Ago2-RN complex in C2C12 myotubes. AGO immunoprecipitation with monoclonal anti-EIF2C2 antibody.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
chr5:148505804-148505827 (UNKNOWN)
2 libraries from Ago2-RN complex in C2C12 myotubes. AGO immunoprecipitation with monoclonal anti-EIF2C2 antibody.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
UNKNOWN
HITS-CLIP
POSITIVE
DIRECT
TarBase 6.0
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
chr5:38527608-38527630 (UNKNOWN)
In vitro activated CD4+ T cells from spleen and lymph nodes. AGO immunoprecipitation was performed with a polyclonal antibody generated against an Argonaute 2 N-terminal peptide. 12 HITS-CLIP libraries from KO miR-155 CD4+ cells.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Location
Method
Result
Regulation
Valid. type
Source
chr5:38527608-38527630 (UNKNOWN)
In vitro activated CD4+ T cells from spleen and lymph nodes. AGO immunoprecipitation was performed with a polyclonal antibody generated against an Argonaute 2 N-terminal peptide. 12 HITS-CLIP libraries from WT CD4+ cells.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
chr4:129647437-129647445 (UNKNOWN)
In vitro activated CD4+ T cells from spleen and lymph nodes. AGO immunoprecipitation was performed with a polyclonal antibody generated against an Argonaute 2 N-terminal peptide. 12 HITS-CLIP libraries from WT CD4+ cells.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
chr4:129647668-129647694 (UNKNOWN)
In vitro activated CD4+ T cells from spleen and lymph nodes. AGO immunoprecipitation was performed with a polyclonal antibody generated against an Argonaute 2 N-terminal peptide. 12 HITS-CLIP libraries from WT CD4+ cells.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Location
Method
Result
Regulation
Valid. type
Source
chr4:129647437-129647445 (UNKNOWN)
2 libraries from Ago2-RN complex in C2C12 myoblasts. AGO immunoprecipitation with monoclonal anti-EIF2C2 antibody.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
chr4:129647437-129647445 (UNKNOWN)
2 libraries from Ago2-RN complex in C2C12 myotubes. AGO immunoprecipitation with monoclonal anti-EIF2C2 antibody.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
chr4:129647727-129647739 (UNKNOWN)
2 libraries from Ago2-RN complex in C2C12 myotubes. AGO immunoprecipitation with monoclonal anti-EIF2C2 antibody.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
chr13:75771275-75771302 (UNKNOWN)
2 libraries from Ago2-RN complex in C2C12 myoblasts. AGO immunoprecipitation with monoclonal anti-EIF2C2 antibody.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
chr11:6596658-6596680 (UNKNOWN)
In vitro activated CD4+ T cells from spleen and lymph nodes. AGO immunoprecipitation was performed with a polyclonal antibody generated against an Argonaute 2 N-terminal peptide. 12 HITS-CLIP libraries from KO miR-155 CD4+ cells.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
chrX:13292678-13292705 (UNKNOWN)
2 libraries from Ago2-RN complex in C2C12 myoblasts. AGO immunoprecipitation with monoclonal anti-EIF2C2 antibody.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
chrX:13293234-13293262 (UNKNOWN)
2 libraries from Ago2-RN complex in C2C12 myotubes. AGO immunoprecipitation with monoclonal anti-EIF2C2 antibody.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
chr8:83611581-83611594 (UNKNOWN)
2 libraries from Ago2-RN complex in C2C12 myotubes. AGO immunoprecipitation with monoclonal anti-EIF2C2 antibody.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
chr16:36043903-36043925 (UNKNOWN)
In vitro activated CD4+ T cells from spleen and lymph nodes. AGO immunoprecipitation was performed with a polyclonal antibody generated against an Argonaute 2 N-terminal peptide. 12 HITS-CLIP libraries from KO miR-155 CD4+ cells.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Location
Method
Result
Regulation
Valid. type
Source
chr16:36043903-36043925 (UNKNOWN)
In vitro activated CD4+ T cells from spleen and lymph nodes. AGO immunoprecipitation was performed with a polyclonal antibody generated against an Argonaute 2 N-terminal peptide. 12 HITS-CLIP libraries from WT CD4+ cells.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Location
Method
Result
Regulation
Valid. type
Source
chr16:36043903-36043925 (UNKNOWN)
2 libraries from Ago2-RN complex in C2C12 myoblasts. AGO immunoprecipitation with monoclonal anti-EIF2C2 antibody.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
chr10:128362217-128362239 (UNKNOWN)
2 libraries from Ago2-RN complex in C2C12 myoblasts. AGO immunoprecipitation with monoclonal anti-EIF2C2 antibody.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
chr10:128362217-128362239 (UNKNOWN)
2 libraries from Ago2-RN complex in C2C12 myotubes. AGO immunoprecipitation with monoclonal anti-EIF2C2 antibody.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
chr10:60295978-60296000 (UNKNOWN)
In vitro activated CD4+ T cells from spleen and lymph nodes. AGO immunoprecipitation was performed with a polyclonal antibody generated against an Argonaute 2 N-terminal peptide. 12 HITS-CLIP libraries from WT CD4+ cells.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
chr11:89038110-89038129 (UNKNOWN)
In vitro activated CD4+ T cells from spleen and lymph nodes. AGO immunoprecipitation was performed with a polyclonal antibody generated against an Argonaute 2 N-terminal peptide. 12 HITS-CLIP libraries from WT CD4+ cells.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Location
Method
Result
Regulation
Valid. type
Source
chr11:89038110-89038129 (UNKNOWN)
2 libraries from Ago2-RN complex in C2C12 myoblasts. AGO immunoprecipitation with monoclonal anti-EIF2C2 antibody.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
chr11:89038110-89038129 (UNKNOWN)
2 libraries from Ago2-RN complex in C2C12 myotubes. AGO immunoprecipitation with monoclonal anti-EIF2C2 antibody.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
chr8:105671337-105671359 (UNKNOWN)
In vitro activated CD4+ T cells from spleen and lymph nodes. AGO immunoprecipitation was performed with a polyclonal antibody generated against an Argonaute 2 N-terminal peptide. 12 HITS-CLIP libraries from KO miR-155 CD4+ cells.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Location
Method
Result
Regulation
Valid. type
Source
chr8:105671337-105671359 (UNKNOWN)
In vitro activated CD4+ T cells from spleen and lymph nodes. AGO immunoprecipitation was performed with a polyclonal antibody generated against an Argonaute 2 N-terminal peptide. 12 HITS-CLIP libraries from WT CD4+ cells.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Location
Method
Result
Regulation
Valid. type
Source
chr8:105682636-105682650 (UNKNOWN)
2 libraries from Ago2-RN complex in C2C12 myotubes. AGO immunoprecipitation with monoclonal anti-EIF2C2 antibody.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
chr11:59776196-59776219 (UNKNOWN)
2 libraries from Ago2-RN complex in C2C12 myoblasts. AGO immunoprecipitation with monoclonal anti-EIF2C2 antibody.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
chr6:127128823-127128846 (UNKNOWN)
In vitro activated CD4+ T cells from spleen and lymph nodes. AGO immunoprecipitation was performed with a polyclonal antibody generated against an Argonaute 2 N-terminal peptide. 12 HITS-CLIP libraries from KO miR-155 CD4+ cells.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Location
Method
Result
Regulation
Valid. type
Source
chr6:127126149-127126164 (UNKNOWN)
In vitro activated CD4+ T cells from spleen and lymph nodes. AGO immunoprecipitation was performed with a polyclonal antibody generated against an Argonaute 2 N-terminal peptide. 12 HITS-CLIP libraries from WT CD4+ cells.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
chr6:127128823-127128846 (UNKNOWN)
In vitro activated CD4+ T cells from spleen and lymph nodes. AGO immunoprecipitation was performed with a polyclonal antibody generated against an Argonaute 2 N-terminal peptide. 12 HITS-CLIP libraries from WT CD4+ cells.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
UNKNOWN
HITS-CLIP
POSITIVE
DIRECT
TarBase 6.0
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
chr17:53671180-53671201 (UNKNOWN)
2 libraries from Ago2-RN complex in C2C12 myoblasts. AGO immunoprecipitation with monoclonal anti-EIF2C2 antibody.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
UNKNOWN
HITS-CLIP
POSITIVE
DIRECT
TarBase 6.0
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
chr15:9507687-9507710 (UNKNOWN)
In vitro activated CD4+ T cells from spleen and lymph nodes. AGO immunoprecipitation was performed with a polyclonal antibody generated against an Argonaute 2 N-terminal peptide. 12 HITS-CLIP libraries from WT CD4+ cells.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Location
Method
Result
Regulation
Valid. type
Source
chr15:9507687-9507710 (UNKNOWN)
In vitro activated CD4+ T cells from spleen and lymph nodes. AGO immunoprecipitation was performed with a polyclonal antibody generated against an Argonaute 2 N-terminal peptide. 12 HITS-CLIP libraries from KO miR-155 CD4+ cells.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
chr3:88168909-88168937 (UNKNOWN)
In vitro activated CD4+ T cells from spleen and lymph nodes. AGO immunoprecipitation was performed with a polyclonal antibody generated against an Argonaute 2 N-terminal peptide. 12 HITS-CLIP libraries from WT CD4+ cells.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Location
Method
Result
Regulation
Valid. type
Source
chr3:88168909-88168937 (UNKNOWN)
2 libraries from Ago2-RN complex in C2C12 myoblasts. AGO immunoprecipitation with monoclonal anti-EIF2C2 antibody.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
chr3:88168909-88168937 (UNKNOWN)
2 libraries from Ago2-RN complex in C2C12 myotubes. AGO immunoprecipitation with monoclonal anti-EIF2C2 antibody.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
chr10:71225522-71225536 (UNKNOWN)
In vitro activated CD4+ T cells from spleen and lymph nodes. AGO immunoprecipitation was performed with a polyclonal antibody generated against an Argonaute 2 N-terminal peptide. 12 HITS-CLIP libraries from KO miR-155 CD4+ cells.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Location
Method
Result
Regulation
Valid. type
Source
chr10:71225522-71225536 (UNKNOWN)
In vitro activated CD4+ T cells from spleen and lymph nodes. AGO immunoprecipitation was performed with a polyclonal antibody generated against an Argonaute 2 N-terminal peptide. 12 HITS-CLIP libraries from WT CD4+ cells.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
UNKNOWN
HITS-CLIP
POSITIVE
DIRECT
TarBase 6.0
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
chr10:78187066-78187093 (UNKNOWN)
In vitro activated CD4+ T cells from spleen and lymph nodes. AGO immunoprecipitation was performed with a polyclonal antibody generated against an Argonaute 2 N-terminal peptide. 12 HITS-CLIP libraries from KO miR-155 CD4+ cells.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
chr7:6705112-6705138 (UNKNOWN)
2 libraries from Ago2-RN complex in C2C12 myoblasts. AGO immunoprecipitation with monoclonal anti-EIF2C2 antibody.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
chr7:6705112-6705138 (UNKNOWN)
2 libraries from Ago2-RN complex in C2C12 myotubes. AGO immunoprecipitation with monoclonal anti-EIF2C2 antibody.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
UNKNOWN
HITS-CLIP
POSITIVE
DIRECT
TarBase 6.0
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
chr6:122845061-122845087 (UNKNOWN)
In vitro activated CD4+ T cells from spleen and lymph nodes. AGO immunoprecipitation was performed with a polyclonal antibody generated against an Argonaute 2 N-terminal peptide. 12 HITS-CLIP libraries from WT CD4+ cells.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Location
Method
Result
Regulation
Valid. type
Source
chr6:122845061-122845087 (UNKNOWN)
In vitro activated CD4+ T cells from spleen and lymph nodes. AGO immunoprecipitation was performed with a polyclonal antibody generated against an Argonaute 2 N-terminal peptide. 12 HITS-CLIP libraries from KO miR-155 CD4+ cells.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Location
Method
Result
Regulation
Valid. type
Source
chr6:122845061-122845087 (UNKNOWN)
2 libraries from Ago2-RN complex in C2C12 myoblasts. AGO immunoprecipitation with monoclonal anti-EIF2C2 antibody.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
chr6:122845061-122845087 (UNKNOWN)
2 libraries from Ago2-RN complex in C2C12 myotubes. AGO immunoprecipitation with monoclonal anti-EIF2C2 antibody.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
chr6:39603479-39603501 (UNKNOWN)
2 libraries from Ago2-RN complex in C2C12 myoblasts. AGO immunoprecipitation with monoclonal anti-EIF2C2 antibody.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
chr6:39603479-39603501 (UNKNOWN)
2 libraries from Ago2-RN complex in C2C12 myotubes. AGO immunoprecipitation with monoclonal anti-EIF2C2 antibody.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
chr2:181517350-181517358 (UNKNOWN)
2 libraries from Ago2-RN complex in C2C12 myoblasts. AGO immunoprecipitation with monoclonal anti-EIF2C2 antibody.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
chr11:121253046-121253074 (UNKNOWN)
8-10 week old male C57Bl/6 mice underwent partial hepatectomy using isofluorane anesthesia between 8 AM and noon, and livers were harvested at the indicated time points after partial hepatectomy. 2 biological replicates for the 36hr timepoint. HITS-CLIP was performed using the monoclonal argonaute antibody 2A8
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Location
Method
Result
Regulation
Valid. type
Source
chr11:121253046-121253074 (UNKNOWN)
8-10 week old male C57Bl/6 mice. 2 biological replicates for quiescent liver. HITS-CLIP was performed using the monoclonal argonaute antibody 2A8
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
UNKNOWN
HITS-CLIP
POSITIVE
DIRECT
TarBase 6.0
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
UNKNOWN
HITS-CLIP
POSITIVE
DIRECT
TarBase 6.0
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
chr6:134922253-134922268 (UNKNOWN)
In vitro activated CD4+ T cells from spleen and lymph nodes. AGO immunoprecipitation was performed with a polyclonal antibody generated against an Argonaute 2 N-terminal peptide. 12 HITS-CLIP libraries from WT CD4+ cells.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
chr3:146731301-146731316 (UNKNOWN)
In vitro activated CD4+ T cells from spleen and lymph nodes. AGO immunoprecipitation was performed with a polyclonal antibody generated against an Argonaute 2 N-terminal peptide. 12 HITS-CLIP libraries from WT CD4+ cells.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Location
Method
Result
Regulation
Valid. type
Source
chr3:146731301-146731316 (UNKNOWN)
In vitro activated CD4+ T cells from spleen and lymph nodes. AGO immunoprecipitation was performed with a polyclonal antibody generated against an Argonaute 2 N-terminal peptide. 12 HITS-CLIP libraries from KO miR-155 CD4+ cells.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Location
Method
Result
Regulation
Valid. type
Source
chr3:146731301-146731316 (UNKNOWN)
2 libraries from Ago2-RN complex in C2C12 myoblasts. AGO immunoprecipitation with monoclonal anti-EIF2C2 antibody.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
chr3:146731301-146731316 (UNKNOWN)
2 libraries from Ago2-RN complex in C2C12 myotubes. AGO immunoprecipitation with monoclonal anti-EIF2C2 antibody.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
chr10:107483680-107483697 (UNKNOWN)
2 libraries from Ago2-RN complex in C2C12 myotubes. AGO immunoprecipitation with monoclonal anti-EIF2C2 antibody.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
chr19:5702464-5702487 (UNKNOWN)
2 libraries from Ago2-RN complex in C2C12 myotubes. AGO immunoprecipitation with monoclonal anti-EIF2C2 antibody.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
chr13:58177377-58177404 (UNKNOWN)
2 libraries from Ago2-RN complex in C2C12 myotubes. AGO immunoprecipitation with monoclonal anti-EIF2C2 antibody.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
chr18:34632744-34632768 (UNKNOWN)
2 libraries from Ago2-RN complex in C2C12 myotubes. AGO immunoprecipitation with monoclonal anti-EIF2C2 antibody.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
chr13:5868876-5868889 (UNKNOWN)
In vitro activated CD4+ T cells from spleen and lymph nodes. AGO immunoprecipitation was performed with a polyclonal antibody generated against an Argonaute 2 N-terminal peptide. 12 HITS-CLIP libraries from KO miR-155 CD4+ cells.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Location
Method
Result
Regulation
Valid. type
Source
chr13:5868876-5868889 (UNKNOWN)
In vitro activated CD4+ T cells from spleen and lymph nodes. AGO immunoprecipitation was performed with a polyclonal antibody generated against an Argonaute 2 N-terminal peptide. 12 HITS-CLIP libraries from WT CD4+ cells.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
chr6:120482808-120482829 (UNKNOWN)
2 libraries from Ago2-RN complex in C2C12 myoblasts. AGO immunoprecipitation with monoclonal anti-EIF2C2 antibody.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
chr1:80266597-80266622 (UNKNOWN)
2 libraries from Ago2-RN complex in C2C12 myotubes. AGO immunoprecipitation with monoclonal anti-EIF2C2 antibody.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
UNKNOWN
HITS-CLIP
POSITIVE
DIRECT
TarBase 6.0
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
chr11:4180164-4180180 (UNKNOWN)
2 libraries from Ago2-RN complex in C2C12 myoblasts. AGO immunoprecipitation with monoclonal anti-EIF2C2 antibody.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
chr2:102842819-102842847 (UNKNOWN)
2 libraries from Ago2-RN complex in C2C12 myoblasts. AGO immunoprecipitation with monoclonal anti-EIF2C2 antibody.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
chr19:61092252-61092271 (UNKNOWN)
8-10 week old male C57Bl/6 mice underwent partial hepatectomy using isofluorane anesthesia between 8 AM and noon, and livers were harvested at the indicated time points after partial hepatectomy. 2 biological replicates for the 1hr timepoint. HITS-CLIP was performed using the monoclonal argonaute antibody 2A8
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Location
Method
Result
Regulation
Valid. type
Source
chr19:61092252-61092271 (UNKNOWN)
2 libraries from Ago2-RN complex in C2C12 myotubes. AGO immunoprecipitation with monoclonal anti-EIF2C2 antibody.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
chr3:142792805-142792820 (UNKNOWN)
In vitro activated CD4+ T cells from spleen and lymph nodes. AGO immunoprecipitation was performed with a polyclonal antibody generated against an Argonaute 2 N-terminal peptide. 12 HITS-CLIP libraries from KO miR-155 CD4+ cells.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Location
Method
Result
Regulation
Valid. type
Source
chr3:142792805-142792820 (UNKNOWN)
In vitro activated CD4+ T cells from spleen and lymph nodes. AGO immunoprecipitation was performed with a polyclonal antibody generated against an Argonaute 2 N-terminal peptide. 12 HITS-CLIP libraries from WT CD4+ cells.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
chr10:128631547-128631575 (UNKNOWN)
In vitro activated CD4+ T cells from spleen and lymph nodes. AGO immunoprecipitation was performed with a polyclonal antibody generated against an Argonaute 2 N-terminal peptide. 12 HITS-CLIP libraries from KO miR-155 CD4+ cells.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
UNKNOWN
HITS-CLIP
POSITIVE
DIRECT
TarBase 6.0
Wdr77 (mmu)
mmu-miR-19b-3p
-
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
chr3:105967806-105967828 (UNKNOWN)
2 libraries from Ago2-RN complex in C2C12 myoblasts. AGO immunoprecipitation with monoclonal anti-EIF2C2 antibody.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Eif4g2 (mmu)
mmu-miR-19b-3p
-
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
chr7:111072118-111072135 (UNKNOWN)
In vitro activated CD4+ T cells from spleen and lymph nodes. AGO immunoprecipitation was performed with a polyclonal antibody generated against an Argonaute 2 N-terminal peptide. 12 HITS-CLIP libraries from WT CD4+ cells.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
chr7:111072152-111072169 (UNKNOWN)
In vitro activated CD4+ T cells from spleen and lymph nodes. AGO immunoprecipitation was performed with a polyclonal antibody generated against an Argonaute 2 N-terminal peptide. 12 HITS-CLIP libraries from WT CD4+ cells.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Location
Method
Result
Regulation
Valid. type
Source
chr7:111072118-111072135 (UNKNOWN)
8-10 week old male C57Bl/6 mice underwent partial hepatectomy using isofluorane anesthesia between 8 AM and noon, and livers were harvested at the indicated time points after partial hepatectomy. 2 biological replicates for the 36hr timepoint. HITS-CLIP was performed using the monoclonal argonaute antibody 2A8
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Ddr1 (mmu)
mmu-miR-19b-3p
-
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
chr17:35681695-35681718 (UNKNOWN)
In vitro activated CD4+ T cells from spleen and lymph nodes. AGO immunoprecipitation was performed with a polyclonal antibody generated against an Argonaute 2 N-terminal peptide. 12 HITS-CLIP libraries from KO miR-155 CD4+ cells.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Location
Method
Result
Regulation
Valid. type
Source
chr17:35681695-35681718 (UNKNOWN)
In vitro activated CD4+ T cells from spleen and lymph nodes. AGO immunoprecipitation was performed with a polyclonal antibody generated against an Argonaute 2 N-terminal peptide. 12 HITS-CLIP libraries from WT CD4+ cells.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Location
Method
Result
Regulation
Valid. type
Source
chr17:35681695-35681718 (UNKNOWN)
2 libraries from Ago2-RN complex in C2C12 myoblasts. AGO immunoprecipitation with monoclonal anti-EIF2C2 antibody.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
chr17:35681695-35681718 (UNKNOWN)
2 libraries from Ago2-RN complex in C2C12 myotubes. AGO immunoprecipitation with monoclonal anti-EIF2C2 antibody.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Cse1l (mmu)
mmu-miR-19b-3p
-
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
chr2:166927485-166927513 (UNKNOWN)
In vitro activated CD4+ T cells from spleen and lymph nodes. AGO immunoprecipitation was performed with a polyclonal antibody generated against an Argonaute 2 N-terminal peptide. 12 HITS-CLIP libraries from WT CD4+ cells.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Fmr1 (mmu)
mmu-miR-19b-3p
-
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
chrX:68715850-68715860 (UNKNOWN)
2 libraries from Ago2-RN complex in C2C12 myoblasts. AGO immunoprecipitation with monoclonal anti-EIF2C2 antibody.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
chrX:68715850-68715860 (UNKNOWN)
2 libraries from Ago2-RN complex in C2C12 myotubes. AGO immunoprecipitation with monoclonal anti-EIF2C2 antibody.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
chrX:68717243-68717267 (UNKNOWN)
2 libraries from Ago2-RN complex in C2C12 myotubes. AGO immunoprecipitation with monoclonal anti-EIF2C2 antibody.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Ap4e1 (mmu)
mmu-miR-19b-3p
-
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
chr2:127033641-127033669 (UNKNOWN)
In vitro activated CD4+ T cells from spleen and lymph nodes. AGO immunoprecipitation was performed with a polyclonal antibody generated against an Argonaute 2 N-terminal peptide. 12 HITS-CLIP libraries from KO miR-155 CD4+ cells.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Dbf4 (mmu)
mmu-miR-19b-3p
-
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
chr5:8399778-8399805 (UNKNOWN)
In vitro activated CD4+ T cells from spleen and lymph nodes. AGO immunoprecipitation was performed with a polyclonal antibody generated against an Argonaute 2 N-terminal peptide. 12 HITS-CLIP libraries from WT CD4+ cells.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Impdh1 (mmu)
mmu-miR-19b-3p
-
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
chr6:29200502-29200527 (UNKNOWN)
In vitro activated CD4+ T cells from spleen and lymph nodes. AGO immunoprecipitation was performed with a polyclonal antibody generated against an Argonaute 2 N-terminal peptide. 12 HITS-CLIP libraries from KO miR-155 CD4+ cells.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Location
Method
Result
Regulation
Valid. type
Source
chr6:29200502-29200527 (UNKNOWN)
2 libraries from Ago2-RN complex in C2C12 myoblasts. AGO immunoprecipitation with monoclonal anti-EIF2C2 antibody.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
chr6:29200502-29200527 (UNKNOWN)
2 libraries from Ago2-RN complex in C2C12 myotubes. AGO immunoprecipitation with monoclonal anti-EIF2C2 antibody.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
chr6:29201100-29201120 (UNKNOWN)
2 libraries from Ago2-RN complex in C2C12 myoblasts. AGO immunoprecipitation with monoclonal anti-EIF2C2 antibody.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
chr6:29201100-29201120 (UNKNOWN)
2 libraries from Ago2-RN complex in C2C12 myotubes. AGO immunoprecipitation with monoclonal anti-EIF2C2 antibody.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Gcdh (mmu)
mmu-miR-19b-3p
-
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
chr8:84889607-84889633 (UNKNOWN)
8-10 week old male C57Bl/6 mice underwent partial hepatectomy using isofluorane anesthesia between 8 AM and noon, and livers were harvested at the indicated time points after partial hepatectomy. 2 biological replicates for the 36hr timepoint. HITS-CLIP was performed using the monoclonal argonaute antibody 2A8
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Myo9b (mmu)
mmu-miR-19b-3p
-
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
chr8:71342824-71342846 (UNKNOWN)
In vitro activated CD4+ T cells from spleen and lymph nodes. AGO immunoprecipitation was performed with a polyclonal antibody generated against an Argonaute 2 N-terminal peptide. 12 HITS-CLIP libraries from KO miR-155 CD4+ cells.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Hbp1 (mmu)
mmu-miR-19b-3p
-
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
chr12:31926500-31926520 (UNKNOWN)
In vitro activated CD4+ T cells from spleen and lymph nodes. AGO immunoprecipitation was performed with a polyclonal antibody generated against an Argonaute 2 N-terminal peptide. 12 HITS-CLIP libraries from KO miR-155 CD4+ cells.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Location
Method
Result
Regulation
Valid. type
Source
chr12:31926500-31926520 (UNKNOWN)
In vitro activated CD4+ T cells from spleen and lymph nodes. AGO immunoprecipitation was performed with a polyclonal antibody generated against an Argonaute 2 N-terminal peptide. 12 HITS-CLIP libraries from WT CD4+ cells.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
chr12:31926696-31926719 (UNKNOWN)
In vitro activated CD4+ T cells from spleen and lymph nodes. AGO immunoprecipitation was performed with a polyclonal antibody generated against an Argonaute 2 N-terminal peptide. 12 HITS-CLIP libraries from WT CD4+ cells.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Location
Method
Result
Regulation
Valid. type
Source
chr12:31926696-31926719 (UNKNOWN)
8-10 week old male C57Bl/6 mice underwent partial hepatectomy using isofluorane anesthesia between 8 AM and noon, and livers were harvested at the indicated time points after partial hepatectomy. 2 biological replicates for the 1hr timepoint. HITS-CLIP was performed using the monoclonal argonaute antibody 2A8
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Location
Method
Result
Regulation
Valid. type
Source
chr12:31926696-31926719 (UNKNOWN)
2 libraries from Ago2-RN complex in C2C12 myoblasts. AGO immunoprecipitation with monoclonal anti-EIF2C2 antibody.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Kdelr1 (mmu)
mmu-miR-19b-3p
-
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
chr7:45883661-45883675 (UNKNOWN)
In vitro activated CD4+ T cells from spleen and lymph nodes. AGO immunoprecipitation was performed with a polyclonal antibody generated against an Argonaute 2 N-terminal peptide. 12 HITS-CLIP libraries from KO miR-155 CD4+ cells.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Location
Method
Result
Regulation
Valid. type
Source
chr7:45883661-45883675 (UNKNOWN)
In vitro activated CD4+ T cells from spleen and lymph nodes. AGO immunoprecipitation was performed with a polyclonal antibody generated against an Argonaute 2 N-terminal peptide. 12 HITS-CLIP libraries from WT CD4+ cells.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Kit (mmu)
mmu-miR-19b-3p
-
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
chr5:75656187-75656211 (UNKNOWN)
Dicer wild-type mESC CLIP library. For immunoprecipitation, anti-mouse Ago2 mAb (lot# PEM0820 Wako 2x100ul 018-22021) was used.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Polr3d (mmu)
mmu-miR-19b-3p
-
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
chr14:70438916-70438940 (UNKNOWN)
Dicer wild-type mESC CLIP library. For immunoprecipitation, anti-mouse Ago2 mAb (lot# PEM0820 Wako 2x100ul 018-22021) was used.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Location
Method
Result
Regulation
Valid. type
Source
chr14:70438916-70438940 (UNKNOWN)
2 libraries from Ago2-RN complex in C2C12 myotubes. AGO immunoprecipitation with monoclonal anti-EIF2C2 antibody.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Sept7 (mmu)
mmu-miR-19b-3p
-
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
chr9:25307615-25307638 (UNKNOWN)
In vitro activated CD4+ T cells from spleen and lymph nodes. AGO immunoprecipitation was performed with a polyclonal antibody generated against an Argonaute 2 N-terminal peptide. 12 HITS-CLIP libraries from WT CD4+ cells.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Pih1d2 (mmu)
mmu-miR-19b-3p
-
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
chr9:50621058-50621080 (UNKNOWN)
2 libraries from Ago2-RN complex in C2C12 myotubes. AGO immunoprecipitation with monoclonal anti-EIF2C2 antibody.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Luzp1 (mmu)
mmu-miR-19b-3p
-
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
chr4:136548590-136548612 (UNKNOWN)
2 libraries from Ago2-RN complex in C2C12 myoblasts. AGO immunoprecipitation with monoclonal anti-EIF2C2 antibody.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
chr4:136548590-136548612 (UNKNOWN)
2 libraries from Ago2-RN complex in C2C12 myotubes. AGO immunoprecipitation with monoclonal anti-EIF2C2 antibody.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Tubb5 (mmu)
mmu-miR-19b-3p
-
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
UNKNOWN
HITS-CLIP
POSITIVE
DIRECT
TarBase 6.0
Tubb5 (mmu)
mmu-miR-19b-3p
-
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
chr17:35838035-35838060 (UNKNOWN)
Dicer wild-type mESC CLIP library. For immunoprecipitation, anti-mouse Ago2 mAb (lot# PEM0820 Wako 2x100ul 018-22021) was used.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Celf1 (mmu)
mmu-miR-19b-3p
-
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
chr2:91018929-91018957 (UNKNOWN)
In vitro activated CD4+ T cells from spleen and lymph nodes. AGO immunoprecipitation was performed with a polyclonal antibody generated against an Argonaute 2 N-terminal peptide. 12 HITS-CLIP libraries from KO miR-155 CD4+ cells.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Location
Method
Result
Regulation
Valid. type
Source
chr2:91018929-91018957 (UNKNOWN)
In vitro activated CD4+ T cells from spleen and lymph nodes. AGO immunoprecipitation was performed with a polyclonal antibody generated against an Argonaute 2 N-terminal peptide. 12 HITS-CLIP libraries from WT CD4+ cells.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Location
Method
Result
Regulation
Valid. type
Source
chr2:91018929-91018957 (UNKNOWN)
8-10 week old male C57Bl/6 mice. 2 biological replicates for quiescent liver. HITS-CLIP was performed using the monoclonal argonaute antibody 2A8
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Clptm1 (mmu)
mmu-miR-19b-3p
-
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
UNKNOWN
HITS-CLIP
POSITIVE
DIRECT
TarBase 6.0
Tmed4 (mmu)
mmu-miR-19b-3p
-
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
chr11:6274734-6274762 (UNKNOWN)
8-10 week old male C57Bl/6 mice underwent partial hepatectomy using isofluorane anesthesia between 8 AM and noon, and livers were harvested at the indicated time points after partial hepatectomy. 2 biological replicates for the 48hr timepoint. HITS-CLIP was performed using the monoclonal argonaute antibody 2A8
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Slc1a2 (mmu)
mmu-miR-19b-3p
-
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
UNKNOWN
HITS-CLIP
POSITIVE
DIRECT
TarBase 6.0
Hbp1 (mmu)
mmu-miR-19b-3p
-
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
UNKNOWN
HITS-CLIP
POSITIVE
DIRECT
TarBase 6.0
Trim28 (mmu)
mmu-miR-19b-3p
-
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
chr7:13027643-13027667 (UNKNOWN)
Dicer wild-type mESC CLIP library. For immunoprecipitation, anti-mouse Ago2 mAb (lot# PEM0820 Wako 2x100ul 018-22021) was used.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Location
Method
Result
Regulation
Valid. type
Source
chr7:13027643-13027667 (UNKNOWN)
In vitro activated CD4+ T cells from spleen and lymph nodes. AGO immunoprecipitation was performed with a polyclonal antibody generated against an Argonaute 2 N-terminal peptide. 12 HITS-CLIP libraries from WT CD4+ cells.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Location
Method
Result
Regulation
Valid. type
Source
chr7:13027643-13027667 (UNKNOWN)
In vitro activated CD4+ T cells from spleen and lymph nodes. AGO immunoprecipitation was performed with a polyclonal antibody generated against an Argonaute 2 N-terminal peptide. 12 HITS-CLIP libraries from KO miR-155 CD4+ cells.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Ap2a2 (mmu)
mmu-miR-19b-3p
-
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
UNKNOWN
HITS-CLIP
POSITIVE
DIRECT
TarBase 6.0
Pemt (mmu)
mmu-miR-19b-3p
-
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
chr11:59970829-59970854 (UNKNOWN)
8-10 week old male C57Bl/6 mice underwent partial hepatectomy using isofluorane anesthesia between 8 AM and noon, and livers were harvested at the indicated time points after partial hepatectomy. 2 biological replicates for the 48hr timepoint. HITS-CLIP was performed using the monoclonal argonaute antibody 2A8
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Rin2 (mmu)
mmu-miR-19b-3p
-
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
chr2:145885796-145885822 (UNKNOWN)
2 libraries from Ago2-RN complex in C2C12 myotubes. AGO immunoprecipitation with monoclonal anti-EIF2C2 antibody.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
chr2:145887540-145887561 (UNKNOWN)
2 libraries from Ago2-RN complex in C2C12 myoblasts. AGO immunoprecipitation with monoclonal anti-EIF2C2 antibody.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Clcn3 (mmu)
mmu-miR-19b-3p
-
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
chr8:60911903-60911926 (UNKNOWN)
In vitro activated CD4+ T cells from spleen and lymph nodes. AGO immunoprecipitation was performed with a polyclonal antibody generated against an Argonaute 2 N-terminal peptide. 12 HITS-CLIP libraries from KO miR-155 CD4+ cells.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
chr8:60911996-60912009 (UNKNOWN)
In vitro activated CD4+ T cells from spleen and lymph nodes. AGO immunoprecipitation was performed with a polyclonal antibody generated against an Argonaute 2 N-terminal peptide. 12 HITS-CLIP libraries from KO miR-155 CD4+ cells.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Location
Method
Result
Regulation
Valid. type
Source
chr8:60911903-60911926 (UNKNOWN)
In vitro activated CD4+ T cells from spleen and lymph nodes. AGO immunoprecipitation was performed with a polyclonal antibody generated against an Argonaute 2 N-terminal peptide. 12 HITS-CLIP libraries from WT CD4+ cells.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Location
Method
Result
Regulation
Valid. type
Source
chr8:60911903-60911926 (UNKNOWN)
2 libraries from Ago2-RN complex in C2C12 myoblasts. AGO immunoprecipitation with monoclonal anti-EIF2C2 antibody.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Sp1 (mmu)
mmu-miR-19b-3p
-
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
chr15:102436311-102436327 (UNKNOWN)
2 libraries from Ago2-RN complex in C2C12 myoblasts. AGO immunoprecipitation with monoclonal anti-EIF2C2 antibody.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
chr15:102436311-102436327 (UNKNOWN)
2 libraries from Ago2-RN complex in C2C12 myotubes. AGO immunoprecipitation with monoclonal anti-EIF2C2 antibody.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Raf1 (mmu)
mmu-miR-19b-3p
-
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
chr6:115618911-115618937 (UNKNOWN)
In vitro activated CD4+ T cells from spleen and lymph nodes. AGO immunoprecipitation was performed with a polyclonal antibody generated against an Argonaute 2 N-terminal peptide. 12 HITS-CLIP libraries from WT CD4+ cells.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Location
Method
Result
Regulation
Valid. type
Source
chr6:115618911-115618937 (UNKNOWN)
2 libraries from Ago2-RN complex in C2C12 myoblasts. AGO immunoprecipitation with monoclonal anti-EIF2C2 antibody.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
chr6:115618911-115618937 (UNKNOWN)
2 libraries from Ago2-RN complex in C2C12 myotubes. AGO immunoprecipitation with monoclonal anti-EIF2C2 antibody.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Fam98a (mmu)
mmu-miR-19b-3p
-
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
chr17:75537175-75537192 (UNKNOWN)
In vitro activated CD4+ T cells from spleen and lymph nodes. AGO immunoprecipitation was performed with a polyclonal antibody generated against an Argonaute 2 N-terminal peptide. 12 HITS-CLIP libraries from WT CD4+ cells.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Acvr1b (mmu)
mmu-miR-19b-3p
-
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
chr15:101212447-101212474 (UNKNOWN)
In vitro activated CD4+ T cells from spleen and lymph nodes. AGO immunoprecipitation was performed with a polyclonal antibody generated against an Argonaute 2 N-terminal peptide. 12 HITS-CLIP libraries from WT CD4+ cells.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Location
Method
Result
Regulation
Valid. type
Source
chr15:101213501-101213529 (UNKNOWN)
2 libraries from Ago2-RN complex in C2C12 myoblasts. AGO immunoprecipitation with monoclonal anti-EIF2C2 antibody.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
chr15:101213501-101213529 (UNKNOWN)
2 libraries from Ago2-RN complex in C2C12 myotubes. AGO immunoprecipitation with monoclonal anti-EIF2C2 antibody.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Polr2a (mmu)
mmu-miR-19b-3p
-
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
chr11:69744984-69745007 (UNKNOWN)
In vitro activated CD4+ T cells from spleen and lymph nodes. AGO immunoprecipitation was performed with a polyclonal antibody generated against an Argonaute 2 N-terminal peptide. 12 HITS-CLIP libraries from KO miR-155 CD4+ cells.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Ergic1 (mmu)
mmu-miR-19b-3p
-
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
chr17:26655521-26655535 (UNKNOWN)
2 libraries from Ago2-RN complex in C2C12 myoblasts. AGO immunoprecipitation with monoclonal anti-EIF2C2 antibody.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Ncan (mmu)
mmu-miR-19b-3p
-
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
UNKNOWN
HITS-CLIP
POSITIVE
DIRECT
TarBase 6.0
Bcan (mmu)
mmu-miR-19b-3p
-
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
UNKNOWN
HITS-CLIP
POSITIVE
DIRECT
TarBase 6.0
Ftcd (mmu)
mmu-miR-19b-3p
-
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
chr10:76581376-76581400 (UNKNOWN)
8-10 week old male C57Bl/6 mice underwent partial hepatectomy using isofluorane anesthesia between 8 AM and noon, and livers were harvested at the indicated time points after partial hepatectomy. 2 biological replicates for the 1hr timepoint. HITS-CLIP was performed using the monoclonal argonaute antibody 2A8
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Celf2 (mmu)
mmu-miR-19b-3p
-
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
UNKNOWN
HITS-CLIP
POSITIVE
DIRECT
TarBase 6.0
Uba1 (mmu)
mmu-miR-19b-3p
-
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
chrX:20678750-20678767 (UNKNOWN)
8-10 week old male C57Bl/6 mice underwent partial hepatectomy using isofluorane anesthesia between 8 AM and noon, and livers were harvested at the indicated time points after partial hepatectomy. 2 biological replicates for the 1hr timepoint. HITS-CLIP was performed using the monoclonal argonaute antibody 2A8
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Cyp51 (mmu)
mmu-miR-19b-3p
-
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
chr5:4082224-4082252 (UNKNOWN)
In vitro activated CD4+ T cells from spleen and lymph nodes. AGO immunoprecipitation was performed with a polyclonal antibody generated against an Argonaute 2 N-terminal peptide. 12 HITS-CLIP libraries from WT CD4+ cells.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Nid1 (mmu)
mmu-miR-19b-3p
-
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
UNKNOWN
HITS-CLIP
POSITIVE
DIRECT
TarBase 6.0
Sox9 (mmu)
mmu-miR-19b-3p
-
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
chr11:112786086-112786108 (UNKNOWN)
2 libraries from Ago2-RN complex in C2C12 myoblasts. AGO immunoprecipitation with monoclonal anti-EIF2C2 antibody.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
chr11:112786086-112786108 (UNKNOWN)
2 libraries from Ago2-RN complex in C2C12 myotubes. AGO immunoprecipitation with monoclonal anti-EIF2C2 antibody.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Mnt (mmu)
mmu-miR-19b-3p
-
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
chr11:74845562-74845570 (UNKNOWN)
2 libraries from Ago2-RN complex in C2C12 myotubes. AGO immunoprecipitation with monoclonal anti-EIF2C2 antibody.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Lcp2 (mmu)
mmu-miR-19b-3p
-
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
chr11:34090636-34090660 (UNKNOWN)
In vitro activated CD4+ T cells from spleen and lymph nodes. AGO immunoprecipitation was performed with a polyclonal antibody generated against an Argonaute 2 N-terminal peptide. 12 HITS-CLIP libraries from WT CD4+ cells.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Location
Method
Result
Regulation
Valid. type
Source
chr11:34090636-34090660 (UNKNOWN)
In vitro activated CD4+ T cells from spleen and lymph nodes. AGO immunoprecipitation was performed with a polyclonal antibody generated against an Argonaute 2 N-terminal peptide. 12 HITS-CLIP libraries from KO miR-155 CD4+ cells.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Kmt2a (mmu)
mmu-miR-19b-3p
-
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
chr9:44822063-44822085 (UNKNOWN)
2 libraries from Ago2-RN complex in C2C12 myoblasts. AGO immunoprecipitation with monoclonal anti-EIF2C2 antibody.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
chr9:44822063-44822085 (UNKNOWN)
2 libraries from Ago2-RN complex in C2C12 myotubes. AGO immunoprecipitation with monoclonal anti-EIF2C2 antibody.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Fam32a (mmu)
mmu-miR-19b-3p
-
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
chr8:72223337-72223364 (UNKNOWN)
In vitro activated CD4+ T cells from spleen and lymph nodes. AGO immunoprecipitation was performed with a polyclonal antibody generated against an Argonaute 2 N-terminal peptide. 12 HITS-CLIP libraries from WT CD4+ cells.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Location
Method
Result
Regulation
Valid. type
Source
chr8:72223337-72223364 (UNKNOWN)
In vitro activated CD4+ T cells from spleen and lymph nodes. AGO immunoprecipitation was performed with a polyclonal antibody generated against an Argonaute 2 N-terminal peptide. 12 HITS-CLIP libraries from KO miR-155 CD4+ cells.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Insr (mmu)
mmu-miR-19b-3p
-
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
chr8:3153792-3153820 (UNKNOWN)
In vitro activated CD4+ T cells from spleen and lymph nodes. AGO immunoprecipitation was performed with a polyclonal antibody generated against an Argonaute 2 N-terminal peptide. 12 HITS-CLIP libraries from KO miR-155 CD4+ cells.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Location
Method
Result
Regulation
Valid. type
Source
chr8:3153792-3153820 (UNKNOWN)
In vitro activated CD4+ T cells from spleen and lymph nodes. AGO immunoprecipitation was performed with a polyclonal antibody generated against an Argonaute 2 N-terminal peptide. 12 HITS-CLIP libraries from WT CD4+ cells.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Location
Method
Result
Regulation
Valid. type
Source
chr8:3152959-3152975 (UNKNOWN)
2 libraries from Ago2-RN complex in C2C12 myoblasts. AGO immunoprecipitation with monoclonal anti-EIF2C2 antibody.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
chr8:3153386-3153401 (UNKNOWN)
2 libraries from Ago2-RN complex in C2C12 myotubes. AGO immunoprecipitation with monoclonal anti-EIF2C2 antibody.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Insr (mmu)
mmu-miR-19b-3p
-
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
UNKNOWN
HITS-CLIP
POSITIVE
DIRECT
TarBase 6.0
Efnb2 (mmu)
mmu-miR-19b-3p
-
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
UNKNOWN
HITS-CLIP
POSITIVE
DIRECT
TarBase 6.0
Calm1 (mmu)
mmu-miR-19b-3p
-
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
chr12:100209098-100209118 (UNKNOWN)
2 libraries from Ago2-RN complex in C2C12 myoblasts. AGO immunoprecipitation with monoclonal anti-EIF2C2 antibody.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
chr12:100209098-100209118 (UNKNOWN)
2 libraries from Ago2-RN complex in C2C12 myotubes. AGO immunoprecipitation with monoclonal anti-EIF2C2 antibody.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Slc25a42 (mmu)
mmu-miR-19b-3p
-
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
UNKNOWN
HITS-CLIP
POSITIVE
DIRECT
TarBase 6.0
Brd8 (mmu)
mmu-miR-19b-3p
-
Publication
Methods
Tissue
Cell line
Tested cell line
Exp. condition
Location
Method
Result
Regulation
Valid. type
Source
chr18:34599908-34599930 (UNKNOWN)
In vitro activated CD4+ T cells from spleen and lymph nodes. AGO immunoprecipitation was performed with a polyclonal antibody generated against an Argonaute 2 N-terminal peptide. 12 HITS-CLIP libraries from KO miR-155 CD4+ cells.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0
Location
Method
Result
Regulation
Valid. type
Source
chr18:34599908-34599930 (UNKNOWN)
In vitro activated CD4+ T cells from spleen and lymph nodes. AGO immunoprecipitation was performed with a polyclonal antibody generated against an Argonaute 2 N-terminal peptide. 12 HITS-CLIP libraries from WT CD4+ cells.
HITS-CLIP
POSITIVE
DIRECT
Tarbase 7.0