DIANA LAB TOOLS PUBLICATIONS
Paraskevopoulou MD, Georgakilas G, Kostoulas N, Reczko M, Maragkakis M, Dalamagas TM, Hatzigeorgiou AG. DIANA-LncBase: experimentally verified and computationally predicted microRNA targets on long non-coding RNAs. Nucleic Acids Research (2013) 41 (D1).
Paraskevopoulou MD, Georgakilas G, Kostoulas N, Vlachos IS, Vergoulis T, Reczko M, Filippidis C, Dalamagas T, Hatzigeorgiou AG. DIANA-microT web server v5.0: service integration into miRNA functional analysis workflows. Nucleic Acids Research 2013 Jul;41(Web Server issue):W169-73. doi: 10.1093/nar/gkt393. Epub 2013 May 16.
I. S. Vlachos, N. Kostoulas, T. Vergoulis, G. Georgakilas, M. Reczko, M. Maragkakis, M. D. Paraskevopoulou, K. Prionidis, T. Dalamagas, A. G. Hatzigeorgiou DIANA miRPath v.2.0: investigating the combinatorial effect of microRNAs in pathways Nucleic Acids Research 2012 (Web server issue) PubMed
T. Vergoulis, M. Alexakis, T. Dalamagas, M. Maragkakis, A. G. Hatzigeorgiou, T. Sellis TARCLOUD: A Cloud-Based Platform to Support miRNA Target Prediction SSDBM 2012: 628-633
T. Vergoulis, I. Vlachos, P. Alexiou, G. Georgakilas, M. Maragkakis, M. Reczko, S. Gerangelos, N. Koziris, T. Dalamagas, AG Hatzigeorgiou; Tarbase 6.0: Capturing the Exponential Growth of miRNA Targets with Experimental Support Nucleic Acids Research 2012 ( Database issue ) PubMed
M. Maragkakis, T. Vergoulis, P. Alexiou, M. Reczko, K. Plomaritou, M. Gousis, K. Kourtis, N. Koziris, T. Dalamagas, AG. Hatzigeorgiou DIANA-microT Web server upgrade supports Fly and Worm miRNA target prediction and bibliographic miRNA to disease association Nucleic Acids Research 2011 (Webserver issue) PubMed
Alexiou P, Maragkakis M, Papadopoulos GL, Simmosis VA, Zhang L, Hatzigeorgiou AG (2010) The DIANA-mirExTra web server: from gene expression data to microRNA function., PLoS ONE ,2010 Feb 11;5(2):e9171. PubMed
P. Alexiou, T. Vergoulis, M. Gleditzsch, G. Prekas, T. Dalamagas, M. Megraw, I. Grosse, T. Sellis, A.G. Hatzigeorgiou (2009) miRGen 2.0: a database of microRNA genomic information and regulation, Nucleic Acids Research ,2010 January; 38(Database issue): D137–D141. PubMed
Alexiou P, Maragkakis M, Papadopoulos GL, Reczko M, Hatzigeorgiou AG (2009) Lost in translation: an assessment and perspective for computational microRNA target identification., Bioinformatics ,2009 Dec 1;25(23):3049-55. Epub 2009 Sep 29. Review. PubMed
Maragkakis M, Alexiou P, Papadopoulos GL, Reczko M, Dalamagas T, Giannopoulos G, Goumas G, Koukis E, Kourtis K, Simossis VA, Sethupathy P, Vergoulis T, Koziris N, Sellis T, Tsanakas P, Hatzigeorgiou AG. (2009) Accurate microRNA target prediction correlates with protein repression levels., BMC Bioinformatics ,2009 Sep 18;10:295. PubMed
Papadopoulos GL, Alexiou P, Maragkakis M, Reczko M, Hatzigeorgiou AG. (2009) DIANA-mirPath: Integrating human and mouse microRNAs in pathways., Bioinformatics. ,2009 Aug 1;25(15):1991-3. Epub 2009 May 12. PubMed
Maragkakis M, Reczko M, Simossis VA, Alexiou P, Papadopoulos GL, Dalamagas T, Giannopoulos G, Goumas G, Koukis E, Kourtis K, Vergoulis T, Koziris N, Sellis T, Tsanakas P, Hatzigeorgiou AG. (2009) DIANA-microT web server: elucidating microRNA functions through target prediction., Nucleic Acids Res. ,2009 Jul 1;37(Web Server issue):W273-6. Epub 2009 Apr 30. PubMed
Papadopoulos GL, Reczko M, Simossis VA, Sethupathy P, Hatzigeorgiou AG. (2009) The database of experimentally supported targets: a functional update of TarBase., Nucleic Acids Res. ,(Database issue) ,D155-8. PubMed
M. Megraw, P. Sethupathy, B. Corda, A.G. Hatzigeorgiou (2007) miRGen: A database for the study of animal microRNA genomic organization and function., Nucleic Acids Res. ,35 ,D149-155. PubMed
P. Sethupathy, B. Corda and A.G. Hatzigeorgiou (2006) TarBase: A comprehensive database of experimentally supported animal microRNA targets., RNA ,12 ,192-197. PubMed
L. Zhang. J. Huang, N. Yang, M. Megraw, S. Liang, T. Naylor, A. Bachetti, A. Giannakakis, G. Yao, S. Liang, A. Medina, D. Katsaros, A. Hatzigeorgiou, P. Gimotty, B. Weber, G. Coukos (2006) MicroRNAs and their associate genes exhibit high frequency genomic alteration in human epithelial cancers , Proc Natl Acad Sci U S A ,USA 13;103(24) ,9136-9141. PubMed
Paraskevopoulou MD, Georgakilas G, Kostoulas N, Reczko M, Maragkakis M, Dalamagas TM, Hatzigeorgiou AG. DIANA-LncBase: experimentally verified and computationally predicted microRNA targets on long non-coding RNAs. Nucleic Acids Research (2013) 41 (D1).
Paraskevopoulou MD, Georgakilas G, Kostoulas N, Vlachos IS, Vergoulis T, Reczko M, Filippidis C, Dalamagas T, Hatzigeorgiou AG. DIANA-microT web server v5.0: service integration into miRNA functional analysis workflows. Nucleic Acids Research 2013 Jul;41(Web Server issue):W169-73. doi: 10.1093/nar/gkt393. Epub 2013 May 16.
I. S. Vlachos, N. Kostoulas, T. Vergoulis, G. Georgakilas, M. Reczko, M. Maragkakis, M. D. Paraskevopoulou, K. Prionidis, T. Dalamagas, A. G. Hatzigeorgiou DIANA miRPath v.2.0: investigating the combinatorial effect of microRNAs in pathways Nucleic Acids Research 2012 (Web server issue) PubMed
T. Vergoulis, M. Alexakis, T. Dalamagas, M. Maragkakis, A. G. Hatzigeorgiou, T. Sellis TARCLOUD: A Cloud-Based Platform to Support miRNA Target Prediction SSDBM 2012: 628-633
T. Vergoulis, I. Vlachos, P. Alexiou, G. Georgakilas, M. Maragkakis, M. Reczko, S. Gerangelos, N. Koziris, T. Dalamagas, AG Hatzigeorgiou; Tarbase 6.0: Capturing the Exponential Growth of miRNA Targets with Experimental Support Nucleic Acids Research 2012 ( Database issue ) PubMed
M. Maragkakis, T. Vergoulis, P. Alexiou, M. Reczko, K. Plomaritou, M. Gousis, K. Kourtis, N. Koziris, T. Dalamagas, AG. Hatzigeorgiou DIANA-microT Web server upgrade supports Fly and Worm miRNA target prediction and bibliographic miRNA to disease association Nucleic Acids Research 2011 (Webserver issue) PubMed
Alexiou P, Maragkakis M, Papadopoulos GL, Simmosis VA, Zhang L, Hatzigeorgiou AG (2010) The DIANA-mirExTra web server: from gene expression data to microRNA function., PLoS ONE ,2010 Feb 11;5(2):e9171. PubMed
P. Alexiou, T. Vergoulis, M. Gleditzsch, G. Prekas, T. Dalamagas, M. Megraw, I. Grosse, T. Sellis, A.G. Hatzigeorgiou (2009) miRGen 2.0: a database of microRNA genomic information and regulation, Nucleic Acids Research ,2010 January; 38(Database issue): D137–D141. PubMed
Alexiou P, Maragkakis M, Papadopoulos GL, Reczko M, Hatzigeorgiou AG (2009) Lost in translation: an assessment and perspective for computational microRNA target identification., Bioinformatics ,2009 Dec 1;25(23):3049-55. Epub 2009 Sep 29. Review. PubMed
Maragkakis M, Alexiou P, Papadopoulos GL, Reczko M, Dalamagas T, Giannopoulos G, Goumas G, Koukis E, Kourtis K, Simossis VA, Sethupathy P, Vergoulis T, Koziris N, Sellis T, Tsanakas P, Hatzigeorgiou AG. (2009) Accurate microRNA target prediction correlates with protein repression levels., BMC Bioinformatics ,2009 Sep 18;10:295. PubMed
Papadopoulos GL, Alexiou P, Maragkakis M, Reczko M, Hatzigeorgiou AG. (2009) DIANA-mirPath: Integrating human and mouse microRNAs in pathways., Bioinformatics. ,2009 Aug 1;25(15):1991-3. Epub 2009 May 12. PubMed
Maragkakis M, Reczko M, Simossis VA, Alexiou P, Papadopoulos GL, Dalamagas T, Giannopoulos G, Goumas G, Koukis E, Kourtis K, Vergoulis T, Koziris N, Sellis T, Tsanakas P, Hatzigeorgiou AG. (2009) DIANA-microT web server: elucidating microRNA functions through target prediction., Nucleic Acids Res. ,2009 Jul 1;37(Web Server issue):W273-6. Epub 2009 Apr 30. PubMed
Papadopoulos GL, Reczko M, Simossis VA, Sethupathy P, Hatzigeorgiou AG. (2009) The database of experimentally supported targets: a functional update of TarBase., Nucleic Acids Res. ,(Database issue) ,D155-8. PubMed
M. Megraw, P. Sethupathy, B. Corda, A.G. Hatzigeorgiou (2007) miRGen: A database for the study of animal microRNA genomic organization and function., Nucleic Acids Res. ,35 ,D149-155. PubMed
P. Sethupathy, B. Corda and A.G. Hatzigeorgiou (2006) TarBase: A comprehensive database of experimentally supported animal microRNA targets., RNA ,12 ,192-197. PubMed
L. Zhang. J. Huang, N. Yang, M. Megraw, S. Liang, T. Naylor, A. Bachetti, A. Giannakakis, G. Yao, S. Liang, A. Medina, D. Katsaros, A. Hatzigeorgiou, P. Gimotty, B. Weber, G. Coukos (2006) MicroRNAs and their associate genes exhibit high frequency genomic alteration in human epithelial cancers , Proc Natl Acad Sci U S A ,USA 13;103(24) ,9136-9141. PubMed