DIANA TOOLS - MicroT-CDS

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Results: 307 targets with miRNAs found in genes ENSG00000124766

. Threshold is set to 0.7.

Gene ID:	SOX4
Expression:	lymph node,prefrontal cortex,H1-hESC,breast,appendix,HUVEC cell line,HSMM cell line,liver,salivary gland,temporal lobe,HMEC cell line,gall bladder,IMR-90,MCF-7,adrenal gland,brain,HepG2,BJ,small intestine,HeLa-S3,colon,esophagus,placenta,NHLF cell line,A549,adrenal,SK-N-SH_RA,leukocyte,adipose tissue,cerebellum,ovary,SK-N-SH,stomach,bone marrow,kidney,pancreas,frontal lobe,cerebral cortex,GM12878,skin,skeletal muscle,NHEK cell line,heart,animal ovary,prostate,lung,thyroid,CD20-positive B cell ce
External Gene ID:	ENSG00000124766
Description:
Chromosome:	6
DIANA resources:	microT v4 microT-CDS

Ensembl Gene Id

miRNA name

miTG score

Also Predicted

ENSG00000124766 (SOX4)

hsa-miR-32-5p

0.999994928152776

Gene details
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miRNA details
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pubMed links: miRNA | gene | both
UCSC graphic

Region

Binding Type

Transcript position

Score

Conservation

UTR3

7mer

2028-2047

0.00808475031330173

Position on chromosome:

6:21598219-21598238

Conserved species:

panTro2

Binding area:

(Transcript)	5'	UGUCCAGA_____UAAAACUG_______U	3'
		________GGCUU________GUGCAAU_
		________..\|\|\|________\|\|\|\|\|\|\|_
		________UUGAA________CACGUUA_
(miRNA)	3'	_______G_____UCAUUA_________U	5'

UTR3

9mer

2458-2478

0.201883202320728

Position on chromosome:

6:21598649-21598669

Conserved species:

panTro2,rheMac2,rn4,mm9,oryCun2,bosTau4,canFam2,dasNov2,loxAfr3,echTel1,monDom5,galGal3,xenTro2,tetNig2,fr2,danRer6

Binding area:

(Transcript)	5'	CUUUUUUU___CAUCCAUCC__________	3'
		________UGC__________UGUGCAAUA
		________\|\|\|__________\|\|\|\|\|\|\|\|\|
		________ACG__________ACACGUUAU
(miRNA)	3'	___________UUGAAUCAUU_________	5'

ENSG00000124766 (SOX4)

hsa-miR-92a-3p

0.999933758173665

Gene details
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miRNA details
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pubMed links: miRNA | gene | both
UCSC graphic

Region

Binding Type

Transcript position

Score

Conservation

UTR3

7mer

2027-2047

0.00865405379181674

Position on chromosome:

6:21598218-21598238

Conserved species:

panTro2

Binding area:

(Transcript)	5'	UGUCCAG_____UUAAA__UG_______U	3'
		_______AGGCU_____AC__GUGCAAU_
		_______\|\|\|\|._____\|\|__\|\|\|\|\|\|\|_
		_______UCCGG_____UG__CACGUUA_
(miRNA)	3'	______G_____CCC____UU_______U	5'

UTR3

8mer

2459-2478

0.15931537113591

Position on chromosome:

6:21598650-21598669

Conserved species:

panTro2,rheMac2,rn4,mm9,oryCun2,bosTau4,canFam2,dasNov2,loxAfr3,echTel1,monDom5,galGal3,xenTro2,tetNig2,fr2,danRer6

Binding area:

(Transcript)	5'	CUUUUUUUU___AUC___UCCU________	3'
		_________GCC____CA____GUGCAAUA
		_________\|\|\|____\|\|____\|\|\|\|\|\|\|\|
		_________CGG____GU____CACGUUAU
(miRNA)	3'	________C___CCCU__U___________	5'

ENSG00000124766 (SOX4)

hsa-miR-92b-3p

0.99992976835451

Gene details
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miRNA details
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pubMed links: miRNA | gene | both
UCSC graphic

Region

Binding Type

Transcript position

Score

Conservation

UTR3

7mer

2026-2047

0.00887027850816514

Position on chromosome:

6:21598217-21598238

Conserved species:

panTro2

Binding area:

(Transcript)	5'	UGUCCA______UUAAA__U________U	3'
		______GAGGCU_____AC_GGUGCAAU_
		______\|\|\|\|\|._____\|\|_.\|\|\|\|\|\|\|_
		______CUCCGG_____UG_UCACGUUA_
(miRNA)	3'	_____C______CCC____C________U	5'

UTR3

8mer

2459-2478

0.158143173934633

Position on chromosome:

6:21598650-21598669

Conserved species:

panTro2,rheMac2,rn4,mm9,oryCun2,bosTau4,canFam2,dasNov2,loxAfr3,echTel1,monDom5,galGal3,xenTro2,tetNig2,fr2,danRer6

Binding area:

(Transcript)	5'	CUUUUUUUU___AUCCAUCCU________	3'
		_________GCC_________GUGCAAUA
		_________\|\|\|_________\|\|\|\|\|\|\|\|
		_________CGG_________CACGUUAU
(miRNA)	3'	________C___CCCUGCU__________	5'

ENSG00000124766 (SOX4)

hsa-miR-3163

0.999912911524724

Gene details
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miRNA details
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pubMed links: miRNA | gene | both
UCSC graphic

Region

Binding Type

Transcript position

Score

Conservation

UTR3

6mer

464-478

0.00400913245846309

Position on chromosome:

6:21596655-21596669

Conserved species:

rheMac2

Binding area:

(Transcript)	5'	CUGCAUCACCACC___G___________U	3'
		_____________UUG_UUUUGUUUUAU_
		_____________.\|\|_..\|..\|\|\|\|\|\|_
		_____________GAC_GGAGUAAAAUA_
(miRNA)	3'	____________U___G___________U	5'

UTR3

9mer

1433-1444

0.0646204491521729

Position on chromosome:

6:21597624-21597635

Conserved species:

panTro2,rheMac2,rn4,mm9,oryCun2,bosTau4,canFam2,dasNov2,loxAfr3,echTel1,monDom5,xenTro2,tetNig2,fr2

Binding area:

(Transcript)	5'	UUGUAAAUGUAAUCAGA_______________	3'
		_________________UGC___CAUUUUAUA
		_________________\|\|\|___\|\|\|\|\|\|\|\|\|
		_________________ACG___GUAAAAUAU
(miRNA)	3'	________________G___GGA_________	5'

UTR3

7mer

1634-1656

0.0233568395720974

Position on chromosome:

6:21597825-21597847

Conserved species:

panTro2,rheMac2,rn4,mm9,oryCun2,bosTau4,canFam2,dasNov2,loxAfr3,echTel1,monDom5,xenTro2,tetNig2,fr2

Binding area:

(Transcript)	5'	GCUAGA______A________AUU_______	3'
		______GUUUUA___CUUUUA___UUUUAUA
		______\|\|.\|\|\|___\|..\|.\|___\|\|\|\|\|\|\|
		______CAGAAU___GGGAGU___AAAAUAU
(miRNA)	3'	____________GAC________________	5'

UTR3

8mer

1782-1805

0.0356692886415611

Position on chromosome:

6:21597973-21597996

Conserved species:

panTro2,rheMac2,rn4,mm9,oryCun2,bosTau4,canFam2,dasNov2,loxAfr3,echTel1,monDom5

Binding area:

(Transcript)	5'	AAUCG__GU___GAUU____G________	3'
		_____CU__UUG____UCCU_AUUUUAUA
		_____\|\|__.\|\|____.\|\|\|_\|\|\|\|\|\|\|\|
		_____GA__GAC____GGGA_UAAAAUAU
(miRNA)	3'	____A__AU___________G________	5'

UTR3

7mer

2090-2111

0.0275973793562297

Position on chromosome:

6:21598281-21598302

Conserved species:

panTro2,rheMac2,rn4,mm9,oryCun2,bosTau4,canFam2,dasNov2,loxAfr3,echTel1,monDom5

Binding area:

(Transcript)	5'	AACCACA____UU____A___U_______	3'
		_______UCUU__UUGC_CUU_UUUUAUA
		_______\|\|\|\|__.\|\|\|_\|\|._\|\|\|\|\|\|\|
		_______AGAA__GACG_GAG_AAAAUAU
(miRNA)	3'	______C____U_____G___U_______	5'

UTR3

6mer

2270-2285

0.00824408636588132

Position on chromosome:

6:21598461-21598476

Conserved species:

panTro2,rheMac2,rn4,mm9,oryCun2,bosTau4,canFam2,dasNov2,loxAfr3,echTel1,monDom5

Binding area:

(Transcript)	5'	UGAUGAUAGCAUA___G____GG______	3'
		_____________UGU_UUCA__UUUAUA
		_____________\|\|._.\|\|\|__\|\|\|\|\|\|
		_____________ACG_GAGU__AAAUAU
(miRNA)	3'	____________G___G____A_______	5'

ENSG00000124766 (SOX4)

hsa-miR-129-5p

0.999859120498169

Gene details
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miRNA details
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pubMed links: miRNA | gene | both
UCSC graphic

Region

Binding Type

Transcript position

Score

Conservation

UTR3

6mer

33-54

0.00646054628803735

Position on chromosome:

6:21596224-21596245

Conserved species:

panTro2

Binding area:

(Transcript)	5'	GGGGGGG_____AG____AGAAAA______	3'
		_______GUAGG___AGG______AAAAAG
		_______\|.\|.\|___\|\|.______\|\|\|\|\|\|
		_______CGUUC___UCU______UUUUUC
(miRNA)	3'	____________GGG___GGCG________	5'

UTR3

6mer

52-64

0.00587209312636169

Position on chromosome:

6:21596243-21596255

Conserved species:

panTro2

Binding area:

(Transcript)	5'	GGAGAGGAGAAAAAAA_________A_________	3'
		________________AAGU___GA____AAAAAG
		________________\|\|\|.___\|\|____\|\|\|\|\|\|
		________________UUCG___CU____UUUUUC
(miRNA)	3'	_______________G____GGU__GGCG______	5'

UTR3

6mer

94-110

0.00623045434821608

Position on chromosome:

6:21596285-21596301

Conserved species:

panTro2,rheMac2

Binding area:

(Transcript)	5'	GAAGAGUUUAAA___AAA___GA________	3'
		____________GAG___AGG____AAAAAG
		____________.\|\|___\|\|.____\|\|\|\|\|\|
		____________UUC___UCU____UUUUUC
(miRNA)	3'	___________G___GGG___GGCG______	5'

UTR3

6mer

101-120

0.00656915168061271

Position on chromosome:

6:21596292-21596311

Conserved species:

panTro2,rn4,canFam2

Binding area:

(Transcript)	5'	AAGAGAAAA___AAAAA___AA________	3'
		_________GGG_____AGA__G_AAAAAG
		_________..\|_____\|\|\|__\|_\|\|\|\|\|\|
		_________UUC_____UCU__C_UUUUUC
(miRNA)	3'	________G___GGG_____GG_G______	5'

UTR3

7mer

304-314

0.0152129906163942

Position on chromosome:

6:21596495-21596505

Conserved species:

panTro2,rheMac2

Binding area:

(Transcript)	5'	UUAUUGAUGUUGUUGUU___G_______A	3'
		_________________GAU_GCAAAAA_
		_________________\|\|._\|\|\|\|\|\|\|_
		_________________CUG_CGUUUUU_
(miRNA)	3'	________________U___G_______C	5'

UTR3

6mer

301-322

0.00647244863778396

Position on chromosome:

6:21596492-21596513

Conserved species:

panTro2,rheMac2,rn4,mm9,canFam2,loxAfr3

Binding area:

(Transcript)	5'	UGUUGUU___G_U___AAAAAAA______	3'
		_______GUU_A_GGC_______AAAAAG
		_______\|.._\|_\|.\|_______\|\|\|\|\|\|
		_______CGG_U_CUG_______UUUUUC
(miRNA)	3'	______U___G_____GCG__________	5'

UTR3

6mer

988-1013

0.00348514302451944

Position on chromosome:

6:21597179-21597204

Conserved species:

panTro2,galGal3

Binding area:

(Transcript)	5'	AGG______GGUU_____AAAAA______	3'
		___GCGAGU____UCGGA_____AAAAAG
		___\|\|.\|\|.____.\|.\|\|_____\|\|\|\|\|\|
		___CGUUCG____GGUCU_____UUUUUC
(miRNA)	3'	__________________GGCG_______	5'

UTR3

6mer

997-1021

0.00150833524829493

Position on chromosome:

6:21597188-21597212

Conserved species:

panTro2

Binding area:

(Transcript)	5'	UGGU______AAAAAAAAAAGAA______	3'
		____UUCGGA_____________AAAAAG
		____..\|.\|\|_____________\|\|\|\|\|\|
		____GGGUCU_____________UUUUUC
(miRNA)	3'	___C______GGCG_______________	5'

UTR3

6mer

1011-1031

0.00144243486611061

Position on chromosome:

6:21597202-21597222

Conserved species:

rheMac2

Binding area:

(Transcript)	5'	AAAAAAAA___AAAAAA___AAA_______	3'
		________AAG______AGA____AAAAAG
		________\|\|\|______\|\|\|____\|\|\|\|\|\|
		________UUC______UCU____UUUUUC
(miRNA)	3'	_______G___GGG______GGCG______	5'

UTR3

6mer

1019-1042

0.00222961519378229

Position on chromosome:

6:21597210-21597233

Conserved species:

panTro2,rheMac2,bosTau4

Binding area:

(Transcript)	5'	AAAAA___AAAAAAAA___AAAA______	3'
		_____AAG________AGA____AAAAAG
		_____\|\|\|________\|\|\|____\|\|\|\|\|\|
		_____UUC________UCU____UUUUUC
(miRNA)	3'	____G___GGG________GGCG______	5'

UTR3

6mer

1170-1190

0.00306129092950122

Position on chromosome:

6:21597361-21597381

Conserved species:

panTro2,rheMac2,mm9,bosTau4,canFam2,dasNov2,loxAfr3

Binding area:

(Transcript)	5'	UUUAAAAU___G____AUAAUA_______	3'
		________AGU_UAGG______UAAAAAG
		________\|\|._.\|\|.______.\|\|\|\|\|\|
		________UCG_GUCU______GUUUUUC
(miRNA)	3'	_______U___G____GGC__________	5'

UTR3

6mer

1689-1694

0.00631529197523426

Position on chromosome:

6:21597880-21597885

Conserved species:

panTro2,rheMac2,rn4,mm9,oryCun2,bosTau4,canFam2,loxAfr3,echTel1,monDom5

Binding area:

(Transcript)	5'	GACUUUUGACACUUUUAAAAAA______A	3'
		______________________CAAAAA_
		______________________\|\|\|\|\|\|_
		______________________GUUUUU_
(miRNA)	3'	_____________________C______C	5'

UTR3

6mer

1688-1697

0.0027465422746237

Position on chromosome:

6:21597879-21597888

Conserved species:

panTro2,rheMac2,rn4,oryCun2,bosTau4,canFam2,dasNov2,loxAfr3,echTel1,monDom5

Binding area:

(Transcript)	5'	CUUUUGACACUUUUAAAAA__AA_______	3'
		___________________AC___AAAAAG
		___________________\|\|___\|\|\|\|\|\|
		___________________UG___UUUUUC
(miRNA)	3'	__________________C__GCG______	5'

UTR3

8mer

2038-2059

0.0197519151551341

Position on chromosome:

6:21598229-21598250

Conserved species:

panTro2,rheMac2,rn4,mm9,oryCun2,bosTau4,canFam2,dasNov2,monDom5,xenTro2

Binding area:

(Transcript)	5'	UUUAAAA_UG__G__AUU__A________	3'
		_______C__GU_CA___AC_GCAAAAAG
		_______\|__\|._\|\|___\|\|_\|\|\|\|\|\|\|\|
		_______G__CG_GU___UG_CGUUUUUC
(miRNA)	3'	______C_UU__G__C____G________	5'

UTR3

7mer

2098-2119

0.0119400653308183

Position on chromosome:

6:21598289-21598310

Conserved species:

panTro2,rheMac2,rn4,mm9,oryCun2,canFam2,dasNov2,loxAfr3,echTel1,monDom5

Binding area:

(Transcript)	5'	UUUUUU___CU___UUUAUAA_______C	3'
		______GCA__UUU_______GCAAAAA_
		______\|\|\|__..._______\|\|\|\|\|\|\|_
		______CGU__GGG_______CGUUUUU_
(miRNA)	3'	_________UC___UCUGG_________C	5'

UTR3

6mer

2286-2312

0.0095190962571744

Position on chromosome:

6:21598477-21598503

Conserved species:

panTro2,rheMac2,rn4,mm9,oryCun2,bosTau4,canFam2,dasNov2,loxAfr3,echTel1

Binding area:

(Transcript)	5'	UA__UGUUGU_____AAA____A______	3'
		__GC______GUUUA___AUUG_AAAAAG
		__\|\|______\|...\|___\|..\|_\|\|\|\|\|\|
		__CG______CGGGU___UGGC_UUUUUC
(miRNA)	3'	____UU_________C______G______	5'

UTR3

8mer

2334-2360

0.034290984010138

Position on chromosome:

6:21598525-21598551

Conserved species:

panTro2,rheMac2,rn4,mm9,oryCun2,bosTau4,canFam2,dasNov2,loxAfr3,echTel1,monDom5,tetNig2,fr2

Binding area:

(Transcript)	5'	UU_________UAUUAUAAUAA________	3'
		__UAAGUCU_G___________GCAAAAAG
		__.\|\|\|.\|._\|___________\|\|\|\|\|\|\|\|
		__GUUCGGG_C___________CGUUUUUC
(miRNA)	3'	_C_______U_UGG________________	5'

UTR3

6mer

2505-2520

0.00738685241384468

Position on chromosome:

6:21598696-21598711

Conserved species:

panTro2,rheMac2,mm9,bosTau4,canFam2,dasNov2,loxAfr3,echTel1

Binding area:

(Transcript)	5'	UUUGUCUUAAAA___A_____A______C	3'
		____________UUC_AGGCC_CAAAAA_
		____________..\|_\|\|.\|\|_\|\|\|\|\|\|_
		____________GGG_UCUGG_GUUUUU_
(miRNA)	3'	___________C_________C______C	5'

UTR3

6mer

2521-2542

0.00513992584539486

Position on chromosome:

6:21598712-21598733

Conserved species:

panTro2,rheMac2

Binding area:

(Transcript)	5'	ACAAAAA___U__UU___GGAAA______	3'
		_______CAA_GU__GGG_____AAAAAG
		_______\|\|\|_\|.__.\|._____\|\|\|\|\|\|
		_______GUU_CG__UCU_____UUUUUC
(miRNA)	3'	______C______GG___GGCG_______	5'

ENSG00000124766 (SOX4)

hsa-miR-3613-3p

0.999622030847803

Gene details
	loading...
miRNA details
	loading...

pubMed links: miRNA | gene | both
UCSC graphic

Region

Binding Type

Transcript position

Score

Conservation

UTR3

6mer

463-473

0.00464205623850263

Position on chromosome:

6:21596654-21596664

Conserved species:

panTro2,rheMac2,oryCun2,monDom5

Binding area:

(Transcript)	5'	CCCUUCCUGCAUCACCAC___GG________	3'
		__________________CUU____UUUUGU
		__________________\|\|\|____\|\|\|\|\|\|
		__________________GAA____AAAACA
(miRNA)	3'	_________________C___AAAA______	5'

UTR3

8mer

1571-1582

0.0157671795729949

Position on chromosome:

6:21597762-21597773

Conserved species:

panTro2,rheMac2,oryCun2,bosTau4,canFam2,dasNov2,echTel1

Binding area:

(Transcript)	5'	UUUUUUUCUUUUUUUU____________G	3'
		________________UUUUUUUUUUUG_
		________________.\|\|\|\|\|\|\|\|\|\|\|_
		________________GAAAAAAAAAAC_
(miRNA)	3'	_______________C____________A	5'

UTR3

7mer

1737-1743

0.0110398766754158

Position on chromosome:

6:21597928-21597934

Conserved species:

panTro2,rheMac2,rn4,mm9,oryCun2,bosTau4,canFam2,dasNov2,loxAfr3,echTel1,monDom5,galGal3,xenTro2,tetNig2,fr2,danRer6

Binding area:

(Transcript)	5'	GUUUGAUUAUUUUCUCAGUGUA_______	3'
		______________________UUUUUGU
		______________________\|\|\|\|\|\|\|
		______________________AAAAACA
(miRNA)	3'	_____________________A_______	5'

UTR3

7mer

2092-2098

0.0148833139698189

Position on chromosome:

6:21598283-21598289

Conserved species:

panTro2,rheMac2,rn4,mm9,oryCun2,bosTau4,canFam2,dasNov2,loxAfr3,echTel1,monDom5

Binding area:

(Transcript)	5'	CUUUAACUUGUAAACCACAUC_______C	3'
		_____________________UUUUUUG_
		_____________________\|\|\|\|\|\|\|_
		_____________________AAAAAAC_
(miRNA)	3'	____________________A_______A	5'

UTR3

7mer

2431-2442

0.0129312728273932

Position on chromosome:

6:21598622-21598633

Conserved species:

panTro2,rheMac2,rn4,mm9,oryCun2,bosTau4,canFam2,echTel1,monDom5

Binding area:

(Transcript)	5'	UUUAAGGCAGUUCCGUU_______________________	3'
		_________________AAGGG___________UUUUUGU
		_________________\|\|\|\|\|___________\|\|\|\|\|\|\|
		_________________UUCCC___________AAAAACA
(miRNA)	3'	________________C_____AACCCGAAAAA_______	5'

UTR3

8mer

2432-2459

0.0328270799275902

Position on chromosome:

6:21598623-21598650

Conserved species:

panTro2,rheMac2,oryCun2,bosTau4,canFam2,dasNov2,loxAfr3,echTel1,xenTro2

Binding area:

(Transcript)	5'	_______UUU____UUAAAC_________C	3'
		_AGGGUU___GUUU______UUUUUUUUG_
		_\|\|\|\|\|\|___\|.\|\|______\|\|\|\|\|\|\|\|\|_
		_UCCCAA___CGAA______AAAAAAAAC_
(miRNA)	3'	U______CC____________________A	5'

UTR3

8mer

2616-2623

0.0474105527060946

Position on chromosome:

6:21598807-21598814

Conserved species:

panTro2,rheMac2,rn4,mm9,oryCun2,bosTau4,canFam2,dasNov2,loxAfr3,echTel1,monDom5

Binding area:

(Transcript)	5'	AUAUACCUUCUGUAAAUAAC________A	3'
		____________________UUUUUUUG_
		____________________\|\|\|\|\|\|\|\|_
		____________________AAAAAAAC_
(miRNA)	3'	___________________A________A	5'

ENSG00000124766 (SOX4)

hsa-miR-374a-5p

0.999589585089785

Gene details
	loading...
miRNA details
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pubMed links: miRNA | gene | both
UCSC graphic

Region

Binding Type

Transcript position

Score

Conservation

UTR3

6mer

1780-1806

0.00570965962235277

Position on chromosome:

6:21597971-21597997

Conserved species:

panTro2,rheMac2,rn4,mm9,oryCun2,bosTau4,canFam2,dasNov2,loxAfr3,echTel1,monDom5

Binding area:

(Transcript)	5'	AU____GUUU___AUUUCC__AUU______	3'
		__CGCU_____GG______UG___UUAUAA
		__\|.\|\|_____\|\|______\|\|___\|\|\|\|\|\|
		__GUGA_____CC______AC___AAUAUU
(miRNA)	3'	______AUAGU__A_______AU_______	5'

UTR3

6mer

2099-2112

0.00835835595157901

Position on chromosome:

6:21598290-21598303

Conserved species:

panTro2,rheMac2,rn4,mm9,oryCun2,bosTau4,canFam2,dasNov2,loxAfr3,echTel1,monDom5

Binding area:

(Transcript)	5'	ACCACAUCUUUUUUG_____UUU______________	3'
		_______________CACUU___________UUAUAA
		_______________\|\|\|\|\|___________\|\|\|\|\|\|
		_______________GUGAA___________AAUAUU
(miRNA)	3'	____________________UAGUCCAACAU______	5'

UTR3

9mer

2330-2349

0.124086762852485

Position on chromosome:

6:21598521-21598540

Conserved species:

panTro2,rheMac2,rn4,mm9,oryCun2,bosTau4,canFam2,dasNov2,loxAfr3,echTel1,monDom5,galGal3

Binding area:

(Transcript)	5'	AUCUUUGUA__________UC__________	3'
		_________CAUUUA__AG__UGUAUUAUAA
		_________\|\|.\|\|\|__\|\|__\|\|\|\|\|\|\|\|\|\|
		_________GUGAAU__UC__ACAUAAUAUU
(miRNA)	3'	_______________AG__CA__________	5'

ENSG00000124766 (SOX4)

hsa-miR-214-5p

0.998565814634597

Gene details
	loading...
miRNA details
	loading...

pubMed links: miRNA | gene | both
UCSC graphic

Region

Binding Type

Transcript position

Score

Conservation

UTR3

8mer

2382-2397

0.11768874754658

Position on chromosome:

6:21598573-21598588

Conserved species:

panTro2,rheMac2,rn4,mm9,oryCun2,bosTau4,canFam2,dasNov2,loxAfr3,echTel1,monDom5,galGal3,xenTro2,tetNig2,fr2

Binding area:

(Transcript)	5'	UAUGUAUGUUUAA____A__U_____________	3'
		_____________UAUA_CA______GACAGGCA
		_____________.\|.\|_\|\|______\|\|\|\|\|\|\|\|
		_____________GUGU_GU______CUGUCCGU
(miRNA)	3'	____________C____C__UCACAU________	5'

ENSG00000124766 (SOX4)

hsa-miR-548aj-3p

0.998073828688009

Gene details
	loading...
miRNA details
	loading...

pubMed links: miRNA | gene | both
UCSC graphic

Region

Binding Type

Transcript position

Score

Conservation

UTR3

6mer

533-538

0.00374807515511415

Position on chromosome:

6:21596724-21596729

Conserved species:

panTro2,rheMac2

Binding area:

(Transcript)	5'	CCCAGCGCACCCCUCCCCCCCUU______	3'
		_______________________UUUUUA
		_______________________\|\|\|\|\|\|
		_______________________AAAAAU
(miRNA)	3'	______________________C______	5'

UTR3

9mer

1144-1165

0.0465511853539262

Position on chromosome:

6:21597335-21597356

Conserved species:

panTro2,rheMac2,rn4,mm9,oryCun2,bosTau4,canFam2,dasNov2,loxAfr3,monDom5

Binding area:

(Transcript)	5'	UUCUGUA_____C__UUGA__________	3'
		_______UAAGA_UG____GCAGUUUUUA
		_______\|\|\|.\|_\|.____\|\|\|\|\|\|\|\|\|\|
		_______AUUUU_AU____CGUCAAAAAU
(miRNA)	3'	____________C__UAA___________	5'

UTR3

6mer

1351-1377

0.00394959404676323

Position on chromosome:

6:21597542-21597568

Conserved species:

panTro2,rheMac2,bosTau4,canFam2,dasNov2,loxAfr3,echTel1

Binding area:

(Transcript)	5'	A____U____A__AGAAGACGU______U	3'
		_UAGG_GUAA_UG_________GUUUUU_
		_\|\|.._\|\|\|\|_\|\|_________\|\|\|\|\|\|_
		_AUUU_CAUU_AC_________CAAAAA_
(miRNA)	3'	_____U____A__GU_____________U	5'

UTR3

6mer

1507-1512

0.00164805002035696

Position on chromosome:

6:21597698-21597703

Conserved species:

panTro2,rheMac2

Binding area:

(Transcript)	5'	UGUCCCUUUUUUUCUUUCCUUUC______	3'
		_______________________UUUUUA
		_______________________\|\|\|\|\|\|
		_______________________AAAAAU
(miRNA)	3'	______________________C______	5'

UTR3

6mer

1631-1654

0.00594012580559504

Position on chromosome:

6:21597822-21597845

Conserved species:

panTro2,rheMac2,rn4,mm9,oryCun2,bosTau4,canFam2,dasNov2,loxAfr3,echTel1,monDom5,xenTro2,tetNig2,fr2

Binding area:

(Transcript)	5'	GGGCU_____UUUAACU__UA_U______	3'
		_____AGAGU_______UU__A_UUUUUA
		_____\|.\|\|\|_______\|\|__\|_\|\|\|\|\|\|
		_____UUUCA_______AA__U_AAAAAU
(miRNA)	3'	____U_____UU_______CG_C______	5'

UTR3

6mer

2096-2109

0.00880683676107696

Position on chromosome:

6:21598287-21598300

Conserved species:

panTro2,rheMac2,rn4,mm9,oryCun2,bosTau4,canFam2,dasNov2,loxAfr3,echTel1,monDom5

Binding area:

(Transcript)	5'	UAAACCACAUCUUUU_____CUU______	3'
		_______________UUGCA___UUUUUA
		_______________\|\|\|\|\|___\|\|\|\|\|\|
		_______________AACGU___AAAAAU
(miRNA)	3'	______________U_____C________	5'

UTR3

6mer

2180-2188

0.00634586165324684

Position on chromosome:

6:21598371-21598379

Conserved species:

panTro2,rheMac2,oryCun2,bosTau4,canFam2,dasNov2,loxAfr3,echTel1,monDom5,galGal3

Binding area:

(Transcript)	5'	AGUUCGCGACACUAUGUAC__________C	3'
		___________________UGC_GUUUUU_
		___________________\|\|\|_\|\|\|\|\|\|_
		___________________ACG_CAAAAA_
(miRNA)	3'	__________________A___U______U	5'

UTR3

6mer

2399-2417

0.00582707986951593

Position on chromosome:

6:21598590-21598608

Conserved species:

panTro2,rheMac2,canFam2,dasNov2,loxAfr3

Binding area:

(Transcript)	5'	UGACAGGCAC_____C__C_____C_______	3'
		__________UAGGA_GU___UGC__UUUUUA
		__________\|\|..\|_\|\|___\|\|\|__\|\|\|\|\|\|
		__________AUUUU_CA___ACG__AAAAAU
(miRNA)	3'	__________________UUA___UC______	5'

UTR3

6mer

2417-2441

0.00854077455627167

Position on chromosome:

6:21598608-21598632

Conserved species:

panTro2,rheMac2,rn4,mm9,oryCun2,bosTau4,canFam2,echTel1,monDom5

Binding area:

(Transcript)	5'	UUUU____C____C__UUAAGG_______	3'
		____AAGG_AGUU_CG______GUUUUUG
		____\|\|.\|_\|.\|\|_\|.______\|\|\|\|\|\|.
		____UUUC_UUAA_GU______CAAAAAU
(miRNA)	3'	___U____A____C_______________	5'

UTR3

7mer

2430-2447

0.0215026700204545

Position on chromosome:

6:21598621-21598638

Conserved species:

panTro2,rheMac2,rn4,oryCun2,bosTau4,canFam2,dasNov2,loxAfr3

Binding area:

(Transcript)	5'	GGCAGUUCCGU_______UUUU__________	3'
		___________UAAGGGU_______GUUUUUA
		___________\|\|\|..\|\|_______\|\|\|\|\|\|\|
		___________AUUUUCA_______CAAAAAU
(miRNA)	3'	__________________UUAACGU_______	5'

ENSG00000124766 (SOX4)

hsa-miR-548x-3p

0.997924922108113

Gene details
	loading...
miRNA details
	loading...

pubMed links: miRNA | gene | both
UCSC graphic

Region

Binding Type

Transcript position

Score

Conservation

UTR3

6mer

533-538

0.00374807515511415

Position on chromosome:

6:21596724-21596729

Conserved species:

panTro2,rheMac2

Binding area:

(Transcript)	5'	CCCAGCGCACCCCUCCCCCCCUU______	3'
		_______________________UUUUUA
		_______________________\|\|\|\|\|\|
		_______________________AAAAAU
(miRNA)	3'	______________________C______	5'

UTR3

9mer

1156-1165

0.046320152500908

Position on chromosome:

6:21597347-21597356

Conserved species:

panTro2,rheMac2,rn4,mm9,oryCun2,bosTau4,canFam2,dasNov2,loxAfr3,monDom5

Binding area:

(Transcript)	5'	UUCUGUAUAAGACUGUUGA__________	3'
		___________________GCAGUUUUUA
		___________________\|\|\|\|\|\|\|\|\|\|
		___________________CGUCAAAAAU
(miRNA)	3'	__________________A__________	5'

UTR3

6mer

1352-1377

0.00411663099918677

Position on chromosome:

6:21597543-21597568

Conserved species:

panTro2,rheMac2,bosTau4,canFam2,dasNov2,loxAfr3,echTel1

Binding area:

(Transcript)	5'	AU_____UAAA__AGAAGACGU______U	3'
		__AGGUG____UG_________GUUUUU_
		__\|.\|\|.____\|\|_________\|\|\|\|\|\|_
		__UUCAU____AC_________CAAAAA_
(miRNA)	3'	_U_____UA____GU_____________U	5'

UTR3

6mer

1507-1512

0.00164805002035696

Position on chromosome:

6:21597698-21597703

Conserved species:

panTro2,rheMac2

Binding area:

(Transcript)	5'	UGUCCCUUUUUUUCUUUCCUUUC______	3'
		_______________________UUUUUA
		_______________________\|\|\|\|\|\|
		_______________________AAAAAU
(miRNA)	3'	______________________C______	5'

UTR3

6mer

1631-1654

0.00593996077089334

Position on chromosome:

6:21597822-21597845

Conserved species:

panTro2,rheMac2,rn4,mm9,oryCun2,bosTau4,canFam2,dasNov2,loxAfr3,echTel1,monDom5,xenTro2,tetNig2,fr2

Binding area:

(Transcript)	5'	GGGCU_____UUUAACU__UA_U______	3'
		_____AGAGU_______UU__A_UUUUUA
		_____\|.\|\|\|_______\|\|__\|_\|\|\|\|\|\|
		_____UUUCA_______AA__U_AAAAAU
(miRNA)	3'	____C_____UU_______CG_C______	5'

UTR3

6mer

2096-2109

0.00880683676107696

Position on chromosome:

6:21598287-21598300

Conserved species:

panTro2,rheMac2,rn4,mm9,oryCun2,bosTau4,canFam2,dasNov2,loxAfr3,echTel1,monDom5

Binding area:

(Transcript)	5'	UAAACCACAUCUUUU_____CUU______	3'
		_______________UUGCA___UUUUUA
		_______________\|\|\|\|\|___\|\|\|\|\|\|
		_______________AACGU___AAAAAU
(miRNA)	3'	______________U_____C________	5'

UTR3

6mer

2180-2188

0.00634586165324684

Position on chromosome:

6:21598371-21598379

Conserved species:

panTro2,rheMac2,oryCun2,bosTau4,canFam2,dasNov2,loxAfr3,echTel1,monDom5,galGal3

Binding area:

(Transcript)	5'	AGUUCGCGACACUAUGUAC__________C	3'
		___________________UGC_GUUUUU_
		___________________\|\|\|_\|\|\|\|\|\|_
		___________________ACG_CAAAAA_
(miRNA)	3'	__________________A___U______U	5'

UTR3

6mer

2401-2417

0.0057164762583706

Position on chromosome:

6:21598592-21598608

Conserved species:

panTro2,rheMac2,canFam2,dasNov2,loxAfr3

Binding area:

(Transcript)	5'	UGACAGGCACUA___C__C_____C_______	3'
		____________GGA_GU___UGC__UUUUUA
		____________\|.\|_\|\|___\|\|\|__\|\|\|\|\|\|
		____________CUU_CA___ACG__AAAAAU
(miRNA)	3'	_______________U__UUA___UC______	5'

UTR3

6mer

2417-2441

0.00855273345995327

Position on chromosome:

6:21598608-21598632

Conserved species:

panTro2,rheMac2,rn4,mm9,oryCun2,bosTau4,canFam2,echTel1,monDom5

Binding area:

(Transcript)	5'	UUUU____C____C__UUAAGG_______	3'
		____AAGG_AGUU_CG______GUUUUUG
		____\|\|.\|_\|.\|\|_\|.______\|\|\|\|\|\|.
		____UUUC_UUAA_GU______CAAAAAU
(miRNA)	3'	___C____A____C_______________	5'

UTR3

7mer

2432-2447

0.0204459940693742

Position on chromosome:

6:21598623-21598638

Conserved species:

panTro2,rheMac2,rn4,oryCun2,bosTau4,canFam2,dasNov2,loxAfr3

Binding area:

(Transcript)	5'	GGCAGUUCCGUUA_____UUUU__________	3'
		_____________AGGGU_______GUUUUUA
		_____________\|..\|\|_______\|\|\|\|\|\|\|
		_____________UUUCA_______CAAAAAU
(miRNA)	3'	____________C_____UUAACGU_______	5'

ENSG00000124766 (SOX4)

hsa-miR-548j-3p

0.997500672961918

Gene details
	loading...
miRNA details
	loading...

pubMed links: miRNA | gene | both
UCSC graphic

Region

Binding Type

Transcript position

Score

Conservation

UTR3

8mer

1144-1164

0.0246792465925366

Position on chromosome:

6:21597335-21597355

Conserved species:

panTro2,rheMac2,rn4,mm9,oryCun2,bosTau4,canFam2,dasNov2,loxAfr3,monDom5

Binding area:

(Transcript)	5'	UUCUGUA_____CU__UGA_________A	3'
		_______UAAGA__GU___GCAGUUUUU_
		_______.\|\|.\|__\|\|___\|\|\|\|\|\|\|\|\|_
		_______GUUUU__CA___CGUCAAAAA_
(miRNA)	3'	______C_________UUA_________C	5'

UTR3

6mer

1352-1377

0.00392008136409974

Position on chromosome:

6:21597543-21597568

Conserved species:

panTro2,rheMac2,bosTau4,canFam2,dasNov2,loxAfr3,echTel1

Binding area:

(Transcript)	5'	AU_____UAA___AGAAGACGU______U	3'
		__AGGUG___AUG_________GUUUUU_
		__\|.\|\|.___\|\|\|_________\|\|\|\|\|\|_
		__UUCAU___UAC_________CAAAAA_
(miRNA)	3'	_U___________GU_____________C	5'

UTR3

6mer

1577-1582

0.0044820876841399

Position on chromosome:

6:21597768-21597773

Conserved species:

panTro2,rheMac2,oryCun2,bosTau4,canFam2,dasNov2,echTel1,monDom5

Binding area:

(Transcript)	5'	UUUUUUUUCUUUUUUUUUUUUUU______	3'
		_______________________UUUUUG
		_______________________\|\|\|\|\|\|
		_______________________AAAAAC
(miRNA)	3'	______________________C______	5'

UTR3

6mer

1731-1742

0.0103877803404409

Position on chromosome:

6:21597922-21597933

Conserved species:

panTro2,rheMac2,rn4,mm9,oryCun2,bosTau4,canFam2,dasNov2,loxAfr3,echTel1,monDom5,galGal3,xenTro2,tetNig2,fr2,danRer6

Binding area:

(Transcript)	5'	CGUUUGAUUAUUUUCUC_____________	3'
		_________________AGUGUA_UUUUUG
		_________________\|.\|\|.\|_\|\|\|\|\|\|
		_________________UUACGU_AAAAAC
(miRNA)	3'	________________A______C______	5'

UTR3

6mer

2077-2098

0.00850672395061613

Position on chromosome:

6:21598268-21598289

Conserved species:

panTro2,rheMac2,rn4,mm9,oryCun2,bosTau4,canFam2,dasNov2,loxAfr3,echTel1,monDom5

Binding area:

(Transcript)	5'	GCUUUAA_UU______AC__CAUCU______	3'
		_______C____GUAA__CA_____UUUUUG
		_______\|____\|\|\|\|__\|\|_____\|\|\|\|\|\|
		_______G____CAUU__GU_____AAAAAC
(miRNA)	3'	______C_UUUU____AC__C__________	5'

UTR3

6mer

2166-2188

0.00605271487276464

Position on chromosome:

6:21598357-21598379

Conserved species:

panTro2,rheMac2,oryCun2,bosTau4,canFam2,dasNov2,loxAfr3,echTel1,monDom5,galGal3

Binding area:

(Transcript)	5'	AGUUC____CACUAU___C__________C	3'
		_____GCGA______GUA_UGC_GUUUUU_
		_____\|\|.\|______\|\|\|_\|\|\|_\|\|\|\|\|\|_
		_____CGUU______CAU_ACG_CAAAAA_
(miRNA)	3'	_________UU_______U___U______C	5'

UTR3

7mer

2420-2441

0.0149009637049967

Position on chromosome:

6:21598611-21598632

Conserved species:

panTro2,rheMac2,rn4,mm9,oryCun2,bosTau4,canFam2,echTel1,monDom5

Binding area:

(Transcript)	5'	UUUUAAG____UUCC__UAAG_________	3'
		_______GCAG____GU_____GGUUUUUG
		_______\|\|\|.____\|\|_____.\|\|\|\|\|\|\|
		_______CGUU____CA_____UCAAAAAC
(miRNA)	3'	___________UU____UUACG________	5'

UTR3

6mer

2430-2446

0.0116639055893112

Position on chromosome:

6:21598621-21598637

Conserved species:

panTro2,rheMac2,rn4,oryCun2,bosTau4,canFam2,dasNov2,loxAfr3,monDom5

Binding area:

(Transcript)	5'	GGCAGUUCCGU_______UUUU________A	3'
		___________UAAGGGU______GUUUUU_
		___________.\|\|..\|\|______\|\|\|\|\|\|_
		___________GUUUUCA______CAAAAA_
(miRNA)	3'	__________C_______UUACGU______C	5'

UTR3

6mer

2431-2459

0.00904132379307599

Position on chromosome:

6:21598622-21598650

Conserved species:

panTro2,rheMac2,oryCun2,bosTau4,canFam2,dasNov2,loxAfr3,echTel1,xenTro2

Binding area:

(Transcript)	5'	_______UUU___UUUUAAACUUU______	3'
		_AAGGGU___UGU___________UUUUUG
		_\|\|..\|\|___\|\|.___________\|\|\|\|\|\|
		_UUUUCA___ACG___________AAAAAC
(miRNA)	3'	G______UU____UC_______________	5'

UTR3

6mer

2615-2623

0.0149586463045536

Position on chromosome:

6:21598806-21598814

Conserved species:

panTro2,rheMac2,rn4,mm9,oryCun2,bosTau4,canFam2,dasNov2,loxAfr3,echTel1,monDom5

Binding area:

(Transcript)	5'	UAUAUACCUUCUGUAAAUAA_UU______	3'
		____________________C__UUUUUG
		____________________\|__\|\|\|\|\|\|
		____________________G__AAAAAC
(miRNA)	3'	___________________C_UC______	5'

ENSG00000124766 (SOX4)

hsa-miR-548aq-3p

0.997491109894267

Gene details
	loading...
miRNA details
	loading...

pubMed links: miRNA | gene | both
UCSC graphic

Region

Binding Type

Transcript position

Score

Conservation

UTR3

8mer

1144-1164

0.0246162189867912

Position on chromosome:

6:21597335-21597355

Conserved species:

panTro2,rheMac2,rn4,mm9,oryCun2,bosTau4,canFam2,dasNov2,loxAfr3,monDom5

Binding area:

(Transcript)	5'	UUCUGUA_____C__UUGA_________A	3'
		_______UAAGA_UG____GCAGUUUUU_
		_______.\|\|.\|_\|.____\|\|\|\|\|\|\|\|\|_
		_______GUUUU_AU____CGUCAAAAA_
(miRNA)	3'	______C_____C__UAA__________C	5'

UTR3

6mer

1351-1377

0.00387629428509497

Position on chromosome:

6:21597542-21597568

Conserved species:

panTro2,rheMac2,bosTau4,canFam2,dasNov2,loxAfr3,echTel1

Binding area:

(Transcript)	5'	A____U____A__AGAAGACGU______U	3'
		_UAGG_GUAA_UG_________GUUUUU_
		_.\|.._\|\|\|\|_\|\|_________\|\|\|\|\|\|_
		_GUUU_CAUU_AC_________CAAAAA_
(miRNA)	3'	C____U____A__GU_____________C	5'

UTR3

6mer

1577-1582

0.0044820876841399

Position on chromosome:

6:21597768-21597773

Conserved species:

panTro2,rheMac2,oryCun2,bosTau4,canFam2,dasNov2,echTel1,monDom5

Binding area:

(Transcript)	5'	UUUUUUUUCUUUUUUUUUUUUUU______	3'
		_______________________UUUUUG
		_______________________\|\|\|\|\|\|
		_______________________AAAAAC
(miRNA)	3'	______________________C______	5'

UTR3

6mer

1730-1742

0.010717665109583

Position on chromosome:

6:21597921-21597933

Conserved species:

panTro2,rheMac2,rn4,mm9,oryCun2,bosTau4,canFam2,dasNov2,loxAfr3,echTel1,monDom5,galGal3,xenTro2,tetNig2,fr2,danRer6

Binding area:

(Transcript)	5'	CGUUUGAUUAUUUUCU____GUAU_____	3'
		________________CAGU____UUUUG
		________________\|\|\|\|____\|\|\|\|\|
		________________GUCA____AAAAC
(miRNA)	3'	_______________C_____________	5'

UTR3

6mer

2088-2098

0.0085423586378667

Position on chromosome:

6:21598279-21598289

Conserved species:

panTro2,rheMac2,rn4,mm9,oryCun2,bosTau4,canFam2,dasNov2,loxAfr3,echTel1,monDom5

Binding area:

(Transcript)	5'	GCUUUAACUUGUAAACCA__UCU______	3'
		__________________CA___UUUUUG
		__________________\|\|___\|\|\|\|\|\|
		__________________GU___AAAAAC
(miRNA)	3'	_________________C__C________	5'

UTR3

6mer

2166-2188

0.00628754535503948

Position on chromosome:

6:21598357-21598379

Conserved species:

panTro2,rheMac2,oryCun2,bosTau4,canFam2,dasNov2,loxAfr3,echTel1,monDom5,galGal3

Binding area:

(Transcript)	5'	AGUUC____CACUAU___C___________C	3'
		_____GCGA______GUA__UGC_GUUUUU_
		_____\|\|.\|______\|\|\|__\|\|\|_\|\|\|\|\|\|_
		_____CGUU______CAU__ACG_CAAAAA_
(miRNA)	3'	_________UU_______UA___U______C	5'

UTR3

7mer

2420-2441

0.0149009637049967

Position on chromosome:

6:21598611-21598632

Conserved species:

panTro2,rheMac2,rn4,mm9,oryCun2,bosTau4,canFam2,echTel1,monDom5

Binding area:

(Transcript)	5'	UUUUAAG____UUCCGUUAAG________	3'
		_______GCAG__________GGUUUUUG
		_______\|\|\|.__________.\|\|\|\|\|\|\|
		_______CGUU__________UCAAAAAC
(miRNA)	3'	___________UUCAUUAACG________	5'

UTR3

6mer

2430-2446

0.0116866388817477

Position on chromosome:

6:21598621-21598637

Conserved species:

panTro2,rheMac2,rn4,oryCun2,bosTau4,canFam2,dasNov2,loxAfr3,monDom5

Binding area:

(Transcript)	5'	GGCAGUUCCGU_______UUUU_________A	3'
		___________UAAGGGU_______GUUUUU_
		___________.\|\|..\|\|_______\|\|\|\|\|\|_
		___________GUUUUCA_______CAAAAA_
(miRNA)	3'	__________C_______UUAACGU______C	5'

UTR3

6mer

2431-2459

0.00846248173812809

Position on chromosome:

6:21598622-21598650

Conserved species:

panTro2,rheMac2,oryCun2,bosTau4,canFam2,dasNov2,loxAfr3,echTel1,xenTro2

Binding area:

(Transcript)	5'	_______UU____UUUUAAACUUU______	3'
		_AAGGGU__UUGU___________UUUUUG
		_\|\|..\|\|__\|\|\|.___________\|\|\|\|\|\|
		_UUUUCA__AACG___________AAAAAC
(miRNA)	3'	G______UU____UC_______________	5'

UTR3

6mer

2615-2623

0.0149586463045536

Position on chromosome:

6:21598806-21598814

Conserved species:

panTro2,rheMac2,rn4,mm9,oryCun2,bosTau4,canFam2,dasNov2,loxAfr3,echTel1,monDom5

Binding area:

(Transcript)	5'	UAUAUACCUUCUGUAAAUAA_UU______	3'
		____________________C__UUUUUG
		____________________\|__\|\|\|\|\|\|
		____________________G__AAAAAC
(miRNA)	3'	___________________C_UC______	5'

ENSG00000124766 (SOX4)

hsa-miR-548ae-3p

0.997464046519345

Gene details
	loading...
miRNA details
	loading...

pubMed links: miRNA | gene | both
UCSC graphic

Region

Binding Type

Transcript position

Score

Conservation

UTR3

8mer

1147-1164

0.0244283988993883

Position on chromosome:

6:21597338-21597355

Conserved species:

panTro2,rheMac2,rn4,mm9,oryCun2,bosTau4,canFam2,dasNov2,loxAfr3,monDom5

Binding area:

(Transcript)	5'	UUCUGUAUAA__CU__UGA__________A	3'
		__________GA__GU____GCAGUUUUU_
		__________\|\|__\|\|____\|\|\|\|\|\|\|\|\|_
		__________CU__CA____CGUCAAAAA_
(miRNA)	3'	_________A__UU__UUAA_________C	5'

UTR3

6mer

1361-1377

0.0040702706836411

Position on chromosome:

6:21597552-21597568

Conserved species:

panTro2,rheMac2,bosTau4,canFam2,dasNov2,loxAfr3,echTel1

Binding area:

(Transcript)	5'	AUAGGUGUAAA_________AC_________U	3'
		___________UGAGA__AG__GU_GUUUUU_
		___________\|\|\|.\|__\|.__\|._\|\|\|\|\|\|_
		___________ACUUU__UU__CG_CAAAAA_
(miRNA)	3'	________________CA__AA__U______C	5'

UTR3

6mer

1577-1582

0.0044820876841399

Position on chromosome:

6:21597768-21597773

Conserved species:

panTro2,rheMac2,oryCun2,bosTau4,canFam2,dasNov2,echTel1,monDom5

Binding area:

(Transcript)	5'	UUUUUUUUCUUUUUUUUUUUUUU______	3'
		_______________________UUUUUG
		_______________________\|\|\|\|\|\|
		_______________________AAAAAC
(miRNA)	3'	______________________C______	5'

UTR3

6mer

1730-1742

0.010717665109583

Position on chromosome:

6:21597921-21597933

Conserved species:

panTro2,rheMac2,rn4,mm9,oryCun2,bosTau4,canFam2,dasNov2,loxAfr3,echTel1,monDom5,galGal3,xenTro2,tetNig2,fr2,danRer6

Binding area:

(Transcript)	5'	CGUUUGAUUAUUUUCU____GUAU_____	3'
		________________CAGU____UUUUG
		________________\|\|\|\|____\|\|\|\|\|
		________________GUCA____AAAAC
(miRNA)	3'	_______________C_____________	5'

UTR3

6mer

2088-2098

0.0085423586378667

Position on chromosome:

6:21598279-21598289

Conserved species:

panTro2,rheMac2,rn4,mm9,oryCun2,bosTau4,canFam2,dasNov2,loxAfr3,echTel1,monDom5

Binding area:

(Transcript)	5'	GCUUUAACUUGUAAACCA__UCU______	3'
		__________________CA___UUUUUG
		__________________\|\|___\|\|\|\|\|\|
		__________________GU___AAAAAC
(miRNA)	3'	_________________C__C________	5'

UTR3

6mer

2180-2188

0.00647357404409011

Position on chromosome:

6:21598371-21598379

Conserved species:

panTro2,rheMac2,oryCun2,bosTau4,canFam2,dasNov2,loxAfr3,echTel1,monDom5,galGal3

Binding area:

(Transcript)	5'	AGUUCGCGACACUAUGUAC__________C	3'
		___________________UGC_GUUUUU_
		___________________\|\|\|_\|\|\|\|\|\|_
		___________________ACG_CAAAAA_
(miRNA)	3'	__________________A___U______C	5'

UTR3

7mer

2417-2441

0.0143782492216814

Position on chromosome:

6:21598608-21598632

Conserved species:

panTro2,rheMac2,rn4,mm9,oryCun2,bosTau4,canFam2,echTel1,monDom5

Binding area:

(Transcript)	5'	UUUU____C____C__UUAAGG_______	3'
		____AAGG_AGUU_CG______GUUUUUG
		____\|\|.\|_\|.\|\|_\|.______\|\|\|\|\|\|\|
		____UUUC_UUAA_GU______CAAAAAC
(miRNA)	3'	___C____A____C_______________	5'

UTR3

6mer

2432-2446

0.0117950114122379

Position on chromosome:

6:21598623-21598637

Conserved species:

panTro2,rheMac2,rn4,oryCun2,bosTau4,canFam2,dasNov2,loxAfr3,monDom5

Binding area:

(Transcript)	5'	GGCAGUUCCGUUA_____UUUU_________A	3'
		_____________AGGGU_______GUUUUU_
		_____________\|..\|\|_______\|\|\|\|\|\|_
		_____________UUUCA_______CAAAAA_
(miRNA)	3'	____________C_____UUAACGU______C	5'

UTR3

6mer

2432-2459

0.00850883731042981

Position on chromosome:

6:21598623-21598650

Conserved species:

panTro2,rheMac2,oryCun2,bosTau4,canFam2,dasNov2,loxAfr3,echTel1,xenTro2

Binding area:

(Transcript)	5'	A_____UU____UUUUAAACUUU______	3'
		_AGGGU__UUGU___________UUUUUG
		_\|..\|\|__\|\|\|.___________\|\|\|\|\|\|
		_UUUCA__AACG___________AAAAAC
(miRNA)	3'	C_____UU____UC_______________	5'

UTR3

6mer

2615-2623

0.0149586463045536

Position on chromosome:

6:21598806-21598814

Conserved species:

panTro2,rheMac2,rn4,mm9,oryCun2,bosTau4,canFam2,dasNov2,loxAfr3,echTel1,monDom5

Binding area:

(Transcript)	5'	UAUAUACCUUCUGUAAAUAA_UU______	3'
		____________________C__UUUUUG
		____________________\|__\|\|\|\|\|\|
		____________________G__AAAAAC
(miRNA)	3'	___________________C_UC______	5'

ENSG00000124766 (SOX4)

hsa-miR-3660

0.997398893639158

Gene details
	loading...
miRNA details
	loading...

pubMed links: miRNA | gene | both
UCSC graphic

Region

Binding Type

Transcript position

Score

Conservation

UTR3

6mer

969-982

0.00144637715126915

Position on chromosome:

6:21597160-21597173

Conserved species:

panTro2,rheMac2

Binding area:

(Transcript)	5'	CUGUUUGAUGUGGUA________A___________	3'
		_______________CAGGG_GC______GUCAGU
		_______________\|\|..._\|\|______\|\|\|\|\|\|
		_______________GUUUU_CG______CAGUCA
(miRNA)	3'	______________A_____A__AGAGGA______	5'

UTR3

8mer

2567-2586

0.106493054555664

Position on chromosome:

6:21598758-21598777

Conserved species:

panTro2,rheMac2,rn4,mm9,oryCun2,bosTau4,canFam2,dasNov2,loxAfr3,echTel1,monDom5,galGal3,xenTro2,tetNig2,fr2

Binding area:

(Transcript)	5'	UAAUCAUG___________ACUG________A	3'
		________UCAA___GUUC____CCUGUCAG_
		________\|\|\|\|___\|.\|\|____\|\|\|\|\|\|\|\|_
		________AGUU___CGAG____GGACAGUC_
(miRNA)	3'	____________UUA____A___________A	5'

ENSG00000124766 (SOX4)

hsa-miR-548ah-3p

0.997200038124251

Gene details
	loading...
miRNA details
	loading...

pubMed links: miRNA | gene | both
UCSC graphic

Region

Binding Type

Transcript position

Score

Conservation

UTR3

8mer

1141-1164

0.0247424858821678

Position on chromosome:

6:21597332-21597355

Conserved species:

panTro2,rheMac2,rn4,mm9,oryCun2,bosTau4,canFam2,dasNov2,loxAfr3,monDom5

Binding area:

(Transcript)	5'	UUCU___U________GUUGA_________A	3'
		____GUA_AAG__ACU_____GCAGUUUUU_
		____\|.\|_\|\|\|__\|\|\|_____\|\|\|\|\|\|\|\|\|_
		____CGU_UUC__UGA_____CGUCAAAAA_
(miRNA)	3'	_______U___AU_________________C	5'

UTR3

6mer

1363-1377

0.00381879798294318

Position on chromosome:

6:21597554-21597568

Conserved species:

panTro2,rheMac2,bosTau4,canFam2,dasNov2,loxAfr3,echTel1

Binding area:

(Transcript)	5'	AUAGGUGUAAAUG___________________U	3'
		_____________AGAAG__AC_GU_GUUUUU_
		_____________\|.\|\|\|__\|\|_\|._\|\|\|\|\|\|_
		_____________UUUUC__UG_CG_CAAAAA_
(miRNA)	3'	____________G_____AU__A__U______C	5'

UTR3

6mer

1577-1582

0.0044820876841399

Position on chromosome:

6:21597768-21597773

Conserved species:

panTro2,rheMac2,oryCun2,bosTau4,canFam2,dasNov2,echTel1,monDom5

Binding area:

(Transcript)	5'	UUUUUUUUCUUUUUUUUUUUUUU______	3'
		_______________________UUUUUG
		_______________________\|\|\|\|\|\|
		_______________________AAAAAC
(miRNA)	3'	______________________C______	5'

UTR3

6mer

1728-1742

0.0106465951375053

Position on chromosome:

6:21597919-21597933

Conserved species:

panTro2,rheMac2,rn4,mm9,oryCun2,bosTau4,canFam2,dasNov2,loxAfr3,echTel1,monDom5,galGal3,xenTro2,tetNig2,fr2,danRer6

Binding area:

(Transcript)	5'	CGUUUGAUUAUUUU_______GUAU_____	3'
		______________CU_CAGU____UUUUG
		______________\|\|_\|\|\|\|____\|\|\|\|\|
		______________GA_GUCA____AAAAC
(miRNA)	3'	_____________U__C_____________	5'

UTR3

6mer

2074-2098

0.00838379496686716

Position on chromosome:

6:21598265-21598289

Conserved species:

panTro2,rheMac2,rn4,mm9,oryCun2,bosTau4,canFam2,dasNov2,loxAfr3,echTel1,monDom5

Binding area:

(Transcript)	5'	GCUU_____U___AACCACAUCU______	3'
		____UAACU_GUA__________UUUUUG
		____\|\|\|\|\|_\|.\|__________\|\|\|\|\|\|
		____AUUGA_CGU__________AAAAAC
(miRNA)	3'	___C_________C_______________	5'

UTR3

6mer

2166-2188

0.00578944925030353

Position on chromosome:

6:21598357-21598379

Conserved species:

panTro2,rheMac2,oryCun2,bosTau4,canFam2,dasNov2,loxAfr3,echTel1,monDom5,galGal3

Binding area:

(Transcript)	5'	AGUUC____CACUAU_______________C	3'
		_____GCGA______GU_ACUGC_GUUUUU_
		_____\|\|.\|______\|\|_\|\|\|\|\|_\|\|\|\|\|\|_
		_____CGUU______CA_UGACG_CAAAAA_
(miRNA)	3'	_________UU______U_____U______C	5'

UTR3

7mer

2420-2441

0.0149009637049967

Position on chromosome:

6:21598611-21598632

Conserved species:

panTro2,rheMac2,rn4,mm9,oryCun2,bosTau4,canFam2,echTel1,monDom5

Binding area:

(Transcript)	5'	UUUUAAG____UUCCGUUAAG________	3'
		_______GCAG__________GGUUUUUG
		_______\|\|\|.__________.\|\|\|\|\|\|\|
		_______CGUU__________UCAAAAAC
(miRNA)	3'	___________UUCAUUGACG________	5'

UTR3

6mer

2430-2446

0.0116695435208374

Position on chromosome:

6:21598621-21598637

Conserved species:

panTro2,rheMac2,rn4,oryCun2,bosTau4,canFam2,dasNov2,loxAfr3,monDom5

Binding area:

(Transcript)	5'	GGCAGUUCCGU_______UU___________A	3'
		___________UAAGGGU__UU___GUUUUU_
		___________.\|\|..\|\|__.\|___\|\|\|\|\|\|_
		___________GUUUUCA__GA___CAAAAA_
(miRNA)	3'	__________C_______UU__CGU______C	5'

UTR3

6mer

2431-2459

0.00837075759991376

Position on chromosome:

6:21598622-21598650

Conserved species:

panTro2,rheMac2,oryCun2,bosTau4,canFam2,dasNov2,loxAfr3,echTel1,xenTro2

Binding area:

(Transcript)	5'	_______UU____UUUUAAACUUU______	3'
		_AAGGGU__UUGU___________UUUUUG
		_\|\|..\|\|__.\|\|.___________\|\|\|\|\|\|
		_UUUUCA__GACG___________AAAAAC
(miRNA)	3'	G______UU____UC_______________	5'

UTR3

6mer

2607-2623

0.0139276558972458

Position on chromosome:

6:21598798-21598814

Conserved species:

panTro2,rheMac2,rn4,mm9,oryCun2,bosTau4,canFam2,dasNov2,loxAfr3,echTel1,monDom5

Binding area:

(Transcript)	5'	UAUAUACCUUCU____________U_________	3'
		____________GUAAA__UAACU____UUUUUG
		____________\|.\|\|\|__\|\|\|\|\|____\|\|\|\|\|\|
		____________CGUUU__AUUGA____AAAAAC
(miRNA)	3'	_________________UC_____CGUC______	5'

ENSG00000124766 (SOX4)

hsa-miR-548am-3p

0.997193440364956

Gene details
	loading...
miRNA details
	loading...

pubMed links: miRNA | gene | both
UCSC graphic

Region

Binding Type

Transcript position

Score

Conservation

UTR3

8mer

1143-1164

0.0249975747345418

Position on chromosome:

6:21597334-21597355

Conserved species:

panTro2,rheMac2,rn4,mm9,oryCun2,bosTau4,canFam2,dasNov2,loxAfr3,monDom5

Binding area:

(Transcript)	5'	UUCUGU______C__UUGA_________A	3'
		______AUAAGA_UG____GCAGUUUUU_
		______\|.\|\|.\|_\|.____\|\|\|\|\|\|\|\|\|_
		______UGUUUU_AU____CGUCAAAAA_
(miRNA)	3'	____________C__UGA__________C	5'

UTR3

6mer

1363-1377

0.00381879798294318

Position on chromosome:

6:21597554-21597568

Conserved species:

panTro2,rheMac2,bosTau4,canFam2,dasNov2,loxAfr3,echTel1

Binding area:

(Transcript)	5'	AUAGGUGUAAAUG___________________U	3'
		_____________AGAAG__AC_GU_GUUUUU_
		_____________\|.\|\|\|__\|\|_\|._\|\|\|\|\|\|_
		_____________UUUUC__UG_CG_CAAAAA_
(miRNA)	3'	____________G_____AU__A__U______C	5'

UTR3

6mer

1577-1582

0.0044820876841399

Position on chromosome:

6:21597768-21597773

Conserved species:

panTro2,rheMac2,oryCun2,bosTau4,canFam2,dasNov2,echTel1,monDom5

Binding area:

(Transcript)	5'	UUUUUUUUCUUUUUUUUUUUUUU______	3'
		_______________________UUUUUG
		_______________________\|\|\|\|\|\|
		_______________________AAAAAC
(miRNA)	3'	______________________C______	5'

UTR3

6mer

1728-1742

0.0106465951375053

Position on chromosome:

6:21597919-21597933

Conserved species:

panTro2,rheMac2,rn4,mm9,oryCun2,bosTau4,canFam2,dasNov2,loxAfr3,echTel1,monDom5,galGal3,xenTro2,tetNig2,fr2,danRer6

Binding area:

(Transcript)	5'	CGUUUGAUUAUUUU_______GUAU_____	3'
		______________CU_CAGU____UUUUG
		______________\|\|_\|\|\|\|____\|\|\|\|\|
		______________GA_GUCA____AAAAC
(miRNA)	3'	_____________U__C_____________	5'

UTR3

6mer

2076-2098

0.00824664792297434

Position on chromosome:

6:21598267-21598289

Conserved species:

panTro2,rheMac2,rn4,mm9,oryCun2,bosTau4,canFam2,dasNov2,loxAfr3,echTel1,monDom5

Binding area:

(Transcript)	5'	GCUUUA__UU______ACCA__UCU______	3'
		______AC____GUAA____CA___UUUUUG
		______\|\|____\|\|\|\|____\|\|___\|\|\|\|\|\|
		______UG____CAUU____GU___AAAAAC
(miRNA)	3'	________UUUU____GAC___C________	5'

UTR3

6mer

2169-2188

0.00576837243718996

Position on chromosome:

6:21598360-21598379

Conserved species:

panTro2,rheMac2,oryCun2,bosTau4,canFam2,dasNov2,loxAfr3,echTel1,monDom5,galGal3

Binding area:

(Transcript)	5'	AGUUCGCG___CUAU_______________C	3'
		________ACA____GU_ACUGC_GUUUUU_
		_