DIANA TOOLS - MicroT-CDS

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Results: 209 targets with miRNAs found in genes ENSG00000111727

. Threshold is set to 0.7.

Gene ID:	HCFC2
Expression:	lymph node,prefrontal cortex,breast,appendix,HUVEC cell line,HSMM cell line,liver,salivary gland,temporal lobe,HMEC cell line,gall bladder,K562,IMR-90,MCF-7,adrenal gland,brain,HepG2,BJ,small intestine,HeLa-S3,colon,esophagus,placenta,NHLF cell line,A549,adrenal,SK-N-SH_RA,leukocyte,adipose tissue,cerebellum,ovary,SK-N-SH,stomach,bone marrow,kidney,pancreas,frontal lobe,cerebral cortex,GM12878,skin,skeletal muscle,NHEK cell line,heart,animal ovary,prostate,lung,thyroid,CD20-positive B cell cell
External Gene ID:	ENSG00000111727
Description:
Chromosome:	12
DIANA resources:	microT v4 microT-CDS

Ensembl Gene Id

miRNA name

miTG score

Also Predicted

ENSG00000111727 (HCFC2)

hsa-miR-20b-3p

0.99797231961123

Gene details
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miRNA details
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pubMed links: miRNA | gene | both
UCSC graphic

Region

Binding Type

Transcript position

Score

Conservation

UTR3

6mer

515-532

0.00643357377492218

Position on chromosome:

12:104497567-104497584

Conserved species:

panTro2,rheMac2,dasNov2,loxAfr3,echTel1

Binding area:

(Transcript)	5'	GUUAUUUGAUU___UUCUUUGU_______	3'
		___________CCU________UUACAGU
		___________\|\|.________.\|\|\|\|\|\|
		___________GGG________GAUGUCA
(miRNA)	3'	__________C___UAU____________	5'

UTR3

9mer

1439-1459

0.109144227367765

Position on chromosome:

12:104498491-104498511

Conserved species:

panTro2,rheMac2,rn4,mm9,oryCun2,bosTau4,canFam2,loxAfr3,echTel1,monDom5

Binding area:

(Transcript)	5'	GUAAAGAA______UU______________	3'
		________CUGGGA___UUUAUACUACAGU
		________\|\|\|\|.\|___...\|\|\|\|\|\|\|\|\|\|
		________GACCUU___GGGUAUGAUGUCA
(miRNA)	3'	______________CAC_____________	5'

UTR3

7mer

1881-1906

0.0128599036881502

Position on chromosome:

12:104495749-104495774

Conserved species:

Not Conserved

Binding area:

(Transcript)	5'	UA____A___AGAUGUA__UG_______C	3'
		__GGAA_UGC_______CC__ACUACAG_
		__\|\|\|\|_\|\|\|_______\|\|__\|\|\|\|\|\|\|_
		__CCUU_ACG_______GG__UGAUGUC_
(miRNA)	3'	_A____C____________UA_______A	5'

ENSG00000111727 (HCFC2)

hsa-miR-5004-5p

0.997915789572849

Gene details
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miRNA details
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pubMed links: miRNA | gene | both
UCSC graphic

Region

Binding Type

Transcript position

Score

Conservation

UTR3

6mer

702-717

0.00556175599264046

Position on chromosome:

12:104497754-104497769

Conserved species:

panTro2,rheMac2,oryCun2,canFam2,dasNov2,loxAfr3,monDom5

Binding area:

(Transcript)	5'	CUUAACUUAUCUG_____CAUUU______	3'
		_____________GCCCU_____UCCUCA
		_____________\|\|\|\|\|_____\|\|\|\|\|\|
		_____________CGGGA_____AGGAGU
(miRNA)	3'	____________A_____C__________	5'

UTR3

7mer

870-897

0.0166851747768066

Position on chromosome:

12:104497922-104497949

Conserved species:

panTro2,rheMac2,rn4,bosTau4,canFam2,dasNov2,loxAfr3,echTel1

Binding area:

(Transcript)	5'	_______CAAAAUUAAA__AUA_______C	3'
		_UGAAUU__________GU___UGUCCUC_
		_\|\|\|\|\|\|__________\|.___\|\|\|\|\|\|\|_
		_ACUUAA__________CG___ACAGGAG_
(miRNA)	3'	C______A___________GG________U	5'

UTR3

8mer

1294-1316

0.0963903306726892

Position on chromosome:

12:104498346-104498368

Conserved species:

panTro2,rheMac2,oryCun2,bosTau4,dasNov2,loxAfr3

Binding area:

(Transcript)	5'	UUUAGG___AC_____A___UA________	3'
		______UUG__UGAGU__GC__UGUCCUCA
		______\|.\|__\|\|\|.\|__\|\|__\|\|\|\|\|\|\|\|
		______AGC__ACUUA__CG__ACAGGAGU
(miRNA)	3'	________________AA__GG________	5'

UTR3

7mer

357-379

0.00813891995460831

Position on chromosome:

12:104461770-104461792

Conserved species:

Not Conserved

Binding area:

(Transcript)	5'	CCUCCU______UUUACCU___________	3'
		______UC_UGG_______CCUUGUCCUCG
		______\|\|_\|\|._______\|\|.\|\|\|\|\|\|\|.
		______AG_ACU_______GGGACAGGAGU
(miRNA)	3'	________C___UAAAC_____________	5'

UTR3

7mer

1457-1468

0.0159753868252621

Position on chromosome:

12:104487337;104489138-104487341;104489144

Conserved species:

Not Conserved

Binding area:

(Transcript)	5'	GAUAUGCUAAGGAAAAA____G______________	3'
		_________________UGAA________GUCCUCA
		_________________\|\|\|\|________\|\|\|\|\|\|\|
		_________________ACUU________CAGGAGU
(miRNA)	3'	________________C____AAACGGGA_______	5'

ENSG00000111727 (HCFC2)

hsa-miR-4671-3p

0.997068134800864

Gene details
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miRNA details
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pubMed links: miRNA | gene | both
UCSC graphic

Region

Binding Type

Transcript position

Score

Conservation

UTR3

7mer

752-770

0.0076963857459773

Position on chromosome:

12:104497804-104497822

Conserved species:

panTro2,rheMac2,oryCun2,canFam2,loxAfr3

Binding area:

(Transcript)	5'	UUUAUCUUUU_____C______UUCA_______	3'
		__________AGGUC_____CU____GCACUAA
		__________\|\|..\|_____\|\|____\|\|\|\|\|\|\|
		__________UCUGG_____GA____CGUGAUU
(miRNA)	3'	_______________UUUCU__UA_________	5'

UTR3

6mer

1467-1484

0.00775442427986743

Position on chromosome:

12:104498519-104498536

Conserved species:

panTro2,rheMac2,mm9,oryCun2,bosTau4,canFam2

Binding area:

(Transcript)	5'	CAGUAUUUGUA_____U_UG_CU_______	3'
		___________AUUAA_G__U___CACUAA
		___________\|..\|\|_\|__\|___\|\|\|\|\|\|
		___________UGGUU_C__A___GUGAUU
(miRNA)	3'	__________C_____U_UG_UAC______	5'

UTR3

8mer

1546-1568

0.0905267984394356

Position on chromosome:

12:104498598-104498620

Conserved species:

panTro2,rheMac2,rn4,mm9,oryCun2,bosTau4,canFam2,loxAfr3,echTel1,monDom5,galGal3

Binding area:

(Transcript)	5'	AAACU________AAAAUAA________C	3'
		_____CUAAAGAU_______AUGCACUA_
		_____\|.\|\|\|\|\|._______\|\|\|\|\|\|\|\|_
		_____GGUUUCUG_______UACGUGAU_
(miRNA)	3'	____U________A______________U	5'

ENSG00000111727 (HCFC2)

hsa-miR-627-3p

0.996482790438503

Gene details
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miRNA details
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pubMed links: miRNA | gene | both
UCSC graphic

Region

Binding Type

Transcript position

Score

Conservation

UTR3

6mer

55-76

0.00590040166277017

Position on chromosome:

12:104497107-104497128

Conserved species:

panTro2,rheMac2,bosTau4,canFam2,loxAfr3

Binding area:

(Transcript)	5'	CUGGUUA___AGAUU_G___UUU______	3'
		_______UGA_____U_UCA___AAAAGA
		_______\|\|\|_____\|_\|\|\|___\|\|\|\|\|\|
		_______ACU_____A_AGU___UUUUCU
(miRNA)	3'	______C___C_____G___UUC______	5'

UTR3

9mer

164-173

0.0621649648035067

Position on chromosome:

12:104497216-104497225

Conserved species:

panTro2,rheMac2,oryCun2,bosTau4,canFam2,dasNov2,echTel1

Binding area:

(Transcript)	5'	UGAAUUAUAGAUCCAAAUA__________	3'
		___________________AAAGAAAAGA
		___________________\|\|\|\|\|\|\|\|\|\|
		___________________UUUCUUUUCU
(miRNA)	3'	__________________G__________	5'

UTR3

8mer

1192-1212

0.0349275692288017

Position on chromosome:

12:104498244-104498264

Conserved species:

panTro2,rheMac2,oryCun2,bosTau4,loxAfr3

Binding area:

(Transcript)	5'	AAUAUACA___CAA___UUGC________	3'
		________GAG___UAA____AGAAAAGA
		________\|\|\|___.\|\|____\|\|\|\|\|\|\|\|
		________CUC___GUU____UCUUUUCU
(miRNA)	3'	_______A___AGA_______________	5'

ENSG00000111727 (HCFC2)

hsa-miR-1284

0.99580593523979

Gene details
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miRNA details
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pubMed links: miRNA | gene | both
UCSC graphic

Region

Binding Type

Transcript position

Score

Conservation

UTR3

6mer

132-155

0.00514471468675663

Position on chromosome:

12:104497184-104497207

Conserved species:

panTro2,rheMac2

Binding area:

(Transcript)	5'	UUCUU____U__AUUUG____AAU______	3'
		_____AAAA_GU______CUG___UAUAGA
		_____\|\|\|\|_\|.______\|\|\|___\|\|\|\|\|\|
		_____UUUU_CG______GAC___AUAUCU
(miRNA)	3'	____C_______GUCCCA____________	5'

UTR3

8mer

1384-1409

0.0987597160751978

Position on chromosome:

12:104498436-104498461

Conserved species:

panTro2,rheMac2,rn4,mm9,oryCun2,bosTau4,canFam2,loxAfr3,echTel1,monDom5

Binding area:

(Transcript)	5'	GUU____UUACUAAUUUAAAG________	3'
		___CCAG______________UGUAUAGA
		___\|\|\|\|______________\|\|\|\|\|\|\|\|
		___GGUC______________ACAUAUCU
(miRNA)	3'	__C____CCAG__________________	5'

UTR3

7mer

2211-2226

0.0177409880374243

Position on chromosome:

12:104496884-104496899

Conserved species:

Not Conserved

Binding area:

(Transcript)	5'	UAUUGUGGUCUU___A_______A_______U	3'
		____________AAG_CA___UC_UGUAUAG_
		____________\|\|\|_\|\|___\|\|_\|\|\|\|\|\|\|_
		____________UUC_GU___AG_ACAUAUC_
(miRNA)	3'	___________U___G__CCC__________U	5'

ENSG00000111727 (HCFC2)

hsa-miR-4775

0.994342123060109

Gene details
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miRNA details
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pubMed links: miRNA | gene | both
UCSC graphic

Region

Binding Type

Transcript position

Score

Conservation

UTR3

7mer

172-196

0.0155474829213378

Position on chromosome:

12:104497224-104497248

Conserved species:

panTro2,rheMac2,rn4,mm9,oryCun2,dasNov2,loxAfr3

Binding area:

(Transcript)	5'	AAAA_______AGACUCUCUG________	3'
		____GAAGCAA__________AAAAUUAG
		____\|\|\|.\|\|\|__________\|\|\|\|\|\|\|.
		____CUUUGUU__________UUUUAAUU
(miRNA)	3'	___G_________________________	5'

UTR3

7mer

236-253

0.0115096366004373

Position on chromosome:

12:104497288-104497305

Conserved species:

panTro2,rheMac2

Binding area:

(Transcript)	5'	UCUUUUAUAAA__A________U________	3'
		___________GA___AAACAG_GAAAUUAA
		___________\|\|___\|\|\|\|\|._.\|\|\|\|\|\|\|
		___________CU___UUUGUU_UUUUAAUU
(miRNA)	3'	__________A__GGC_______________	5'

UTR3

7mer

530-555

0.0111176436811594

Position on chromosome:

12:104497582-104497607

Conserved species:

panTro2,rheMac2,bosTau4

Binding area:

(Transcript)	5'	UAC___UAGC__A___CU___________	3'
		___AGU____AC_GAG__UAAGAAAUUAA
		___\|\|\|____\|\|_\|\|.__.\|\|.\|\|\|\|\|\|\|
		___UCA____UG_CUU__GUUUUUUAAUU
(miRNA)	3'	______C_____G___U____________	5'

UTR3

8mer

850-857

0.0140217568378271

Position on chromosome:

12:104497902-104497909

Conserved species:

panTro2,rheMac2

Binding area:

(Transcript)	5'	GGCUCUAAUUUUGCUUUUGCU________	3'
		_____________________AAAAUUAA
		_____________________\|\|\|\|\|\|\|\|
		_____________________UUUUAAUU
(miRNA)	3'	____________________U________	5'

UTR3

8mer

868-884

0.0200995141903118

Position on chromosome:

12:104497920-104497936

Conserved species:

panTro2,rheMac2,oryCun2,dasNov2,loxAfr3,echTel1

Binding area:

(Transcript)	5'	AAAAUCUUCAUA______UUC_________	3'
		____________AUUGAA____AAAAUUAA
		____________\|..\|\|\|____\|\|\|\|\|\|\|\|
		____________UGGCUU____UUUUAAUU
(miRNA)	3'	___________C______UGUU________	5'

UTR3

6mer

1161-1185

0.00522008787544739

Position on chromosome:

12:104498213-104498237

Conserved species:

panTro2,rheMac2

Binding area:

(Transcript)	5'	UUCC____CCUAUUU____CU________	3'
		____ACUG_______AAAU__GGAAUUAA
		____\|\|.\|_______\|\|\|.__..\|\|\|\|\|\|
		____UGGC_______UUUG__UUUUAAUU
(miRNA)	3'	___C_______________UU________	5'

UTR3

6mer

1452-1471

0.00924467469105955

Position on chromosome:

12:104498504-104498523

Conserved species:

panTro2,rheMac2,rn4,mm9,oryCun2,bosTau4,canFam2,echTel1

Binding area:

(Transcript)	5'	GAUUUUUAU__________UAUUUGU______	3'
		_________ACU___ACAG_______AAUUAA
		_________\|\|.___\|\|\|._______\|\|\|\|\|\|
		_________UGG___UGUU_______UUAAUU
(miRNA)	3'	________C___CUU____UU___________	5'

UTR3

6mer

1473-1488

0.0084273909188624

Position on chromosome:

12:104498525-104498540

Conserved species:

panTro2,rheMac2,rn4,mm9,bosTau4,canFam2

Binding area:

(Transcript)	5'	AUUUGUAAUUAAU___U__C____U_________	3'
		_____________GUG_CU___AC____AAUUAA
		_____________\|\|\|_\|.___\|\|____\|\|\|\|\|\|
		_____________CAC_GG___UG____UUAAUU
(miRNA)	3'	____________U___U__CUU__UUUU______	5'

ENSG00000111727 (HCFC2)

hsa-miR-6881-5p

0.99365855829161

Gene details
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miRNA details
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pubMed links: miRNA | gene | both
UCSC graphic

Region

Binding Type

Transcript position

Score

Conservation

UTR3

8mer

265-282

0.0900157476820514

Position on chromosome:

12:104497317-104497334

Conserved species:

panTro2,rheMac2,oryCun2,bosTau4,canFam2,dasNov2

Binding area:

(Transcript)	5'	GAUAAAAGCUA__AAG____UA__________	3'
		___________GA____CUU____UUACCCCA
		___________\|\|____\|.\|____\|\|\|\|\|\|\|\|
		___________CU____GGA____AAUGGGGU
(miRNA)	3'	__________A__GGGA___UAGG________	5'

UTR3

6mer

1311-1336

0.00329705171498205

Position on chromosome:

12:104498363-104498388

Conserved species:

rheMac2

Binding area:

(Transcript)	5'	UG_____AAAUUUCA___AUGA______C	3'
		__UCCUC________UGU____UACCCC_
		__.\|\|\|\|________\|.\|____\|\|\|\|\|\|_
		__GGGAG________AUA____AUGGGG_
(miRNA)	3'	_U_____G__________GGA_______U	5'

ENSG00000111727 (HCFC2)

hsa-miR-3163

0.993398471795925

Gene details
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miRNA details
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pubMed links: miRNA | gene | both
UCSC graphic

Region

Binding Type

Transcript position

Score

Conservation

UTR3

7mer

211-233

0.0171053224448982

Position on chromosome:

12:104497263-104497285

Conserved species:

panTro2,rheMac2,oryCun2,dasNov2

Binding area:

(Transcript)	5'	UUCUUC_____A_AUAUAG___________	3'
		______CUUAC_G______CUC_UUUUAUA
		______\|\|\|\|\|_\|______\|\|\|_\|\|\|\|\|\|\|
		______GAAUG_C______GAG_AAAAUAU
(miRNA)	3'	_____A_____A_GG_______U_______	5'

UTR3

7mer

271-294

0.0158121590474597

Position on chromosome:

12:104497323-104497346

Conserved species:

panTro2,rheMac2,bosTau4,dasNov2,loxAfr3,echTel1

Binding area:

(Transcript)	5'	AAAGC______A______AUAUC_______	3'
		_____UUUAUU_CCC_CA_____UUUUAUA
		_____.\|\|\|.\|_\|\|\|_\|\|_____\|\|\|\|\|\|\|
		_____GAAUGA_GGG_GU_____AAAAUAU
(miRNA)	3'	____A______C___A______________	5'

UTR3

6mer

575-593

0.00763349806507229

Position on chromosome:

12:104497627-104497645

Conserved species:

panTro2,rheMac2,oryCun2,bosTau4,canFam2,dasNov2

Binding area:

(Transcript)	5'	AGUUUAGAA_________GAAC______U	3'
		_________ACUGCUUUU____UUUUAU_
		_________\|\|\|\|\|..\|.____\|\|\|\|\|\|_
		_________UGACGGGAG____AAAAUA_
(miRNA)	3'	________A_________U_________U	5'

UTR3

6mer

969-994

0.0111182281725126

Position on chromosome:

12:104498021-104498046

Conserved species:

panTro2,rheMac2,rn4,mm9,oryCun2,bosTau4,canFam2,dasNov2,loxAfr3,echTel1,monDom5

Binding area:

(Transcript)	5'	AU_____UAAA______AAAU_______U	3'
		__UUUUG____UGCUCU____GUUUUAU_
		__\|.\|\|.____\|\|\|.\|\|____.\|\|\|\|\|\|_
		__AGAAU____ACGGGA____UAAAAUA_
(miRNA)	3'	_C_____G_________G__________U	5'

UTR3

7mer

1252-1268

0.01269091746512

Position on chromosome:

12:104498304-104498320

Conserved species:

panTro2,rheMac2,bosTau4

Binding area:

(Transcript)	5'	GCAGGGGCACAG____A_________U_______	3'
		____________GUCU______UCUU_UUUUAUA
		____________\|\|\|\|______.\|\|._\|\|\|\|\|\|\|
		____________CAGA______GGAG_AAAAUAU
(miRNA)	3'	________________AUGACG____U_______	5'

UTR3

7mer

1438-1452

0.0306786176370627

Position on chromosome:

12:104498490-104498504

Conserved species:

panTro2,rheMac2,rn4,mm9,oryCun2,bosTau4,canFam2,loxAfr3,echTel1,monDom5

Binding area:

(Transcript)	5'	AAUUUUUGUAAAGA____GGAU_________	3'
		______________ACUG______UUUUAUA
		______________\|\|\|\|______\|\|\|\|\|\|\|
		______________UGAC______AAAAUAU
(miRNA)	3'	_____________A____GGGAGU_______	5'

UTR3

9mer

1367-1393

0.0143267701198408

Position on chromosome:

12:104487247-104487273

Conserved species:

Not Conserved

Binding area:

(Transcript)	5'	GC____ACGGAU___AAUGC_________	3'
		__ACUG______UCU_____CAUUUUAUA
		__\|\|\|\|______.\|\|_____\|\|\|\|\|\|\|\|\|
		__UGAC______GGA_____GUAAAAUAU
(miRNA)	3'	_A____G______________________	5'

ENSG00000111727 (HCFC2)

hsa-miR-448

0.992866240372867

Gene details
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miRNA details
	loading...

pubMed links: miRNA | gene | both
UCSC graphic

Region

Binding Type

Transcript position

Score

Conservation

UTR3

8mer

1494-1512

0.0957323089056398

Position on chromosome:

12:104498546-104498564

Conserved species:

panTro2,rheMac2,rn4,mm9,oryCun2,bosTau4,canFam2,loxAfr3,monDom5

Binding area:

(Transcript)	5'	AUUAAGUUUC_____AAGAAA________	3'
		__________UCUUG______AUAUGCAA
		__________\|\|.\|.______\|\|\|\|\|\|\|\|
		__________AGGAU______UAUACGUU
(miRNA)	3'	_________U_____G_____________	5'

UTR3

8mer

1215-1229

0.0108838978115807

Position on chromosome:

12:104480777-104480791

Conserved species:

Not Conserved

Binding area:

(Transcript)	5'	CAGAUUCUUCAGCA______AA_________	3'
		______________GCA_CC___AUAUGCAA
		______________.\|\|_\|\|___\|\|\|\|\|\|\|\|
		______________UGU_GG___UAUACGUU
(miRNA)	3'	_____________C___A__AUG________	5'

UTR3

8mer

1674-1682

0.014692828986655

Position on chromosome:

12:104490146-104490154

Conserved species:

Not Conserved

Binding area:

(Transcript)	5'	CAAAUCUGAAGUUGAUGAA_________C	3'
		___________________ACAUAUGCA_
		___________________\|\|\|\|\|\|\|\|\|_
		___________________UGUAUACGU_
(miRNA)	3'	__________________A_________U	5'

ENSG00000111727 (HCFC2)

hsa-miR-3658

0.989259881357042

Gene details
	loading...
miRNA details
	loading...

pubMed links: miRNA | gene | both
UCSC graphic

Region

Binding Type

Transcript position

Score

Conservation

UTR3

8mer

110-134

0.0734200776611617

Position on chromosome:

12:104497162-104497186

Conserved species:

panTro2,rheMac2,rn4,mm9,bosTau4,canFam2,dasNov2,loxAfr3

Binding area:

(Transcript)	5'	UGAA___G_GUU___AAAUUG________	3'
		____CUU_A___UGU______UUCUUAAA
		____\|\|._\|___\|\|\|______\|\|\|\|\|\|\|\|
		____GAG_U___ACA______AAGAAUUU
(miRNA)	3'	___A___G_ACC___A_____________	5'

UTR3

6mer

811-827

0.00590565707344394

Position on chromosome:

12:104497863-104497879

Conserved species:

panTro2,rheMac2,oryCun2,bosTau4,canFam2,dasNov2,loxAfr3

Binding area:

(Transcript)	5'	UGUCCCUGAAC________CUG__________U	3'
		___________AUUUUCAU_______UCUUAA_
		___________\|\|.\|.\|\|\|_______\|\|\|\|\|\|_
		___________UAGAGGUA_______AGAAUU_
(miRNA)	3'	___________________CCACAAA______U	5'

UTR3

6mer

1071-1088

0.00530325323986839

Position on chromosome:

12:104498123-104498140

Conserved species:

panTro2,rheMac2,bosTau4,canFam2,dasNov2,loxAfr3

Binding area:

(Transcript)	5'	GCUAACUCAGG______UACAAC________	3'
		___________UUCCAU________CUUAAA
		___________.\|\|\|\|\|________\|\|\|\|\|\|
		___________GAGGUA________GAAUUU
(miRNA)	3'	__________A______CCACAAAA______	5'

ENSG00000111727 (HCFC2)

hsa-miR-6805-3p

0.987521295773227

Gene details
	loading...
miRNA details
	loading...

pubMed links: miRNA | gene | both
UCSC graphic

Region

Binding Type

Transcript position

Score

Conservation

UTR3

8mer

1176-1197

0.0821480352008624

Position on chromosome:

12:104498228-104498249

Conserved species:

panTro2,rheMac2,canFam2,loxAfr3,echTel1

Binding area:

(Transcript)	5'	UUUAAAU____AAUUAAUAUA_________	3'
		_______CUGG___________CAGAGCAA
		_______\|\|\|\|___________\|\|\|\|\|\|\|\|
		_______GACC___________GUCUCGUU
(miRNA)	3'	___________CCCGCCCCCUC________	5'

ENSG00000111727 (HCFC2)

hsa-miR-548c-3p

0.986911156929381

Gene details
	loading...
miRNA details
	loading...

pubMed links: miRNA | gene | both
UCSC graphic

Region

Binding Type

Transcript position

Score

Conservation

UTR3

7mer

657-679

0.00560721306103224

Position on chromosome:

12:104497709-104497731

Conserved species:

panTro2,rheMac2,bosTau4,dasNov2

Binding area:

(Transcript)	5'	CCAGGC___UAUAU_____AUAU_______	3'
		______CAA______UUGA____AUUUUUG
		______\|\|\|______\|\|\|\|____\|\|\|\|\|\|\|
		______GUU______AACU____UAAAAAC
(miRNA)	3'	_____C___UUCAUU____C__________	5'

UTR3

9mer

957-973

0.0219949612526513

Position on chromosome:

12:104498009-104498025

Conserved species:

panTro2,rheMac2,oryCun2,bosTau4,canFam2,dasNov2

Binding area:

(Transcript)	5'	UAGUGUUUUAAA__UUU________________	3'
		____________CA___GUA____AGAUUUUUG
		____________\|\|___\|\|\|____\|\|\|\|\|\|\|\|\|
		____________GU___CAU____UCUAAAAAC
(miRNA)	3'	___________C__UUU___UAAC_________	5'

UTR3

7mer

973-999

0.00860759887424011

Position on chromosome:

12:104498025-104498051

Conserved species:

panTro2,rheMac2,rn4,mm9,oryCun2,bosTau4,canFam2,dasNov2,loxAfr3,echTel1,monDom5,galGal3

Binding area:

(Transcript)	5'	UU_____UGCUC___A__UUUU_______	3'
		__GUAAA_____UAA_UG____AUUUUUG
		__\|.\|\|\|_____\|\|\|_\|\|____\|\|\|\|\|\|\|
		__CGUUU_____AUU_AC____UAAAAAC
(miRNA)	3'	_______UC______A__UC_________	5'

UTR3

7mer

1425-1431

0.0118779404817969

Position on chromosome:

12:104498477-104498483

Conserved species:

panTro2,rheMac2,rn4,mm9,oryCun2,bosTau4,canFam2

Binding area:

(Transcript)	5'	GUAUAGAAUAUUUUAAUAUAUA_______	3'
		______________________AUUUUUG
		______________________\|\|\|\|\|\|\|
		______________________UAAAAAC
(miRNA)	3'	_____________________C_______	5'

UTR3

7mer

1431-1449

0.0351848276490528

Position on chromosome:

12:104498483-104498501

Conserved species:

panTro2,rheMac2,rn4,mm9,oryCun2,bosTau4,canFam2,loxAfr3,echTel1,monDom5

Binding area:

(Transcript)	5'	AUAAUUUUU__________C__________A	3'
		_________GUAAAG__AA_UGGGAUUUUU_
		_________\|.\|\|\|.__\|\|_\|\|.\|\|\|\|\|\|\|_
		_________CGUUUU__UU_ACUCUAAAAA_
(miRNA)	3'	_______________CA__A__________C	5'

UTR3

7mer

470-489

0.0184915057832899

Position on chromosome:

12:104461883;104473223-104461885;104473239

Conserved species:

Not Conserved

Binding area:

(Transcript)	5'	AAUGUUCC____UAUUUAAAU_______A	3'
		________CAGA_________GAUUUUU_
		________\|\|.\|_________\|\|\|\|\|\|\|_
		________GUUU_________CUAAAAA_
(miRNA)	3'	_______C____UCAUUAACU_______C	5'

ENSG00000111727 (HCFC2)

hsa-miR-5691

0.982441309282183

Gene details
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miRNA details
	loading...

pubMed links: miRNA | gene | both
UCSC graphic

Region

Binding Type

Transcript position

Score

Conservation

UTR3

8mer

1175-1197

0.076481866402611

Position on chromosome:

12:104498227-104498249

Conserved species:

panTro2,rheMac2,canFam2,loxAfr3,echTel1

Binding area:

(Transcript)	5'	UUUAAA_______A__AAUAUA________	3'
		______UCU_GGA_UU______CAGAGCAA
		______\|\|\|_\|\|\|_.\|______\|\|\|\|\|\|\|\|
		______AGA_CCU_GA______GUCUCGUU
(miRNA)	3'	_____A___G___C________________	5'

ENSG00000111727 (HCFC2)

hsa-miR-5011-5p

0.982211044205365

Gene details
	loading...
miRNA details
	loading...

pubMed links: miRNA | gene | both
UCSC graphic

Region

Binding Type

Transcript position

Score

Conservation

UTR3

6mer

352-374

0.00300309472255681

Position on chromosome:

12:104497404-104497426

Conserved species:

panTro2,rheMac2

Binding area:

(Transcript)	5'	GGCUGU_____ACUAU_____CU______	3'
		______UGUAU_____GCUGU__UAUAUA
		______\|\|.\|\|_____\|\|\|\|\|__\|\|\|\|\|\|
		______ACGUA_____CGACA__AUAUAU
(miRNA)	3'	_____C_____C_________U_______	5'

UTR3

6mer

652-664

0.00597966616266621

Position on chromosome:

12:104497704-104497716

Conserved species:

panTro2,rheMac2,oryCun2,bosTau4,canFam2,dasNov2

Binding area:

(Transcript)	5'	UUUCUUGAUUCUUAC______CA_______U	3'
		_______________CA_GGC___AUAUAU_
		_______________\|\|_\|\|\|___\|\|\|\|\|\|_
		_______________GU_CCG___UAUAUA_
(miRNA)	3'	______________C__A___ACA______U	5'

UTR3

6mer

652-674

0.00297146453461077

Position on chromosome:

12:104497704-104497726

Conserved species:

panTro2,oryCun2,canFam2

Binding area:

(Transcript)	5'	CUUAC______CAAUAUAUU__A______U	3'
		_____CA_GGC_________UG_AUAUAU_
		_____\|\|_\|\|\|_________\|\|_\|\|\|\|\|\|_
		_____GU_CCG_________AC_UAUAUA_
(miRNA)	3'	____C__A______________A______U	5'

UTR3

7mer

1358-1375

0.0201126186770144

Position on chromosome:

12:104498410-104498427

Conserved species:

panTro2,rheMac2,oryCun2,canFam2,loxAfr3

Binding area:

(Transcript)	5'	UGGAUUUAAUU_____GAA___________	3'
		___________GUGCA___UUG_AUAUAUA
		___________\|\|\|\|\|___.\|\|_\|\|\|\|\|\|\|
		___________CACGU___GAC_UAUAUAU
(miRNA)	3'	__________U_____ACC___A_______	5'

UTR3

7mer

1358-1377

0.0135214388112362

Position on chromosome:

12:104498410-104498429

Conserved species:

panTro2,rheMac2,oryCun2,canFam2,loxAfr3

Binding area:

(Transcript)	5'	GAUUUAAUU_____GAA___A________	3'
		_________GUGCA___UUG_UAUAUAUG
		_________\|\|\|\|\|___.\|\|_\|\|\|\|\|\|\|.
		_________CACGU___GAC_AUAUAUAU
(miRNA)	3'	________U_____ACC____________	5'

UTR3

7mer

1400-1424

0.0318380858502239

Position on chromosome:

12:104498452-104498476

Conserved species:

panTro2,rheMac2,rn4,mm9,oryCun2,bosTau4,canFam2,loxAfr3,echTel1,monDom5

Binding area:

(Transcript)	5'	UUAA_______A_AAUAUUUUA_______	3'
		____AGUGUAU_G_________AUAUAUA
		____\|\|\|\|.\|\|_\|_________\|\|\|\|\|\|\|
		____UCACGUA_C_________UAUAUAU
(miRNA)	3'	___C_______C_GACA____________	5'

UTR3

7mer

568-593

0.0160812615902903

Position on chromosome:

12:104473318-104473343

Conserved species:

Not Conserved

Binding area:

(Transcript)	5'	AA___AAUCC__CACA____U_______U	3'
		__GAG_____CA____GCUG_UAUAUAU_
		__\|\|\|_____\|\|____\|\|\|\|_\|\|\|\|\|\|\|_
		__CUC_____GU____CGAC_AUAUAUA_
(miRNA)	3'	_____AC_____AC______________U	5'

ENSG00000111727 (HCFC2)

hsa-miR-18b-5p

0.979099422169034

Gene details
	loading...
miRNA details
	loading...

pubMed links: miRNA | gene | both
UCSC graphic

Region

Binding Type

Transcript position

Score

Conservation

UTR3

8mer

899-924

0.0699646569100184

Position on chromosome:

12:104497951-104497976

Conserved species:

panTro2,rheMac2,oryCun2,bosTau4,canFam2,dasNov2,loxAfr3,echTel1,monDom5

Binding area:

(Transcript)	5'	UCC_______GAAAAAAACAA________	3'
		___UAUUGGA___________GCACCUUA
		___.\|.\|.\|\|___________\|\|\|\|\|\|\|\|
		___GUGAUCU___________CGUGGAAU
(miRNA)	3'	__C_______A__________________	5'

UTR3

6mer

1270-1281

0.0058466423143263

Position on chromosome:

12:104498322-104498333

Conserved species:

panTro2,rheMac2,oryCun2,canFam2,loxAfr3

Binding area:

(Transcript)	5'	UCUAUCUUUUUUUAUAC___AUA__________	3'
		_________________CAC_______ACCUUA
		_________________\|\|\|_______\|\|\|\|\|\|
		_________________GUG_______UGGAAU
(miRNA)	3'	________________C___AUCUACG______	5'

UTR3

7mer

2351-2370

0.0351298392289277

Position on chromosome:

12:104497024-104497043

Conserved species:

Not Conserved

Binding area:

(Transcript)	5'	CUUCAAGG____A____A___AA_______U	3'
		________UAAC___AU_AGA__GCACCUU_
		________\|\|\|\|___\|._\|\|\|__\|\|\|\|\|\|\|_
		________AUUG___UG_UCU__CGUGGAA_
(miRNA)	3'	_______G____ACG__A___A________U	5'

ENSG00000111727 (HCFC2)

hsa-miR-18a-5p

0.97867635812091

Gene details
	loading...
miRNA details
	loading...

pubMed links: miRNA | gene | both
UCSC graphic

Region

Binding Type

Transcript position

Score

Conservation

UTR3

8mer

899-924

0.0699646569100184

Position on chromosome:

12:104497951-104497976

Conserved species:

panTro2,rheMac2,oryCun2,bosTau4,canFam2,dasNov2,loxAfr3,echTel1,monDom5

Binding area:

(Transcript)	5'	UCC_______GAAAAAAACAA________	3'
		___UAUUGGA___________GCACCUUA
		___.\|.\|.\|\|___________\|\|\|\|\|\|\|\|
		___GUGAUCU___________CGUGGAAU
(miRNA)	3'	__C_______A__________________	5'

UTR3

6mer

1254-1281

0.0054019028316695

Position on chromosome:

12:104498306-104498333

Conserved species:

panTro2,rheMac2,oryCun2,canFam2,loxAfr3

Binding area:

(Transcript)	5'	U______UUUUUUA___CACAUA_______	3'
		_CUAUCU_______UAC_______ACCUUA
		_\|\|\|\|\|\|_______.\|\|_______\|\|\|\|\|\|
		_GAUAGA_______GUG_______UGGAAU
(miRNA)	3'	_______C_________AUCUACG______	5'

UTR3

7mer

2354-2370

0.0346982615610626

Position on chromosome:

12:104497027-104497043

Conserved species:

Not Conserved

Binding area:

(Transcript)	5'	CUUCAAGGUAA__AUA___AA_______U	3'
		___________CA___AGA__GCACCUU_
		___________\|\|___\|\|\|__\|\|\|\|\|\|\|_
		___________GU___UCU__CGUGGAA_
(miRNA)	3'	__________C__GA____A________U	5'

ENSG00000111727 (HCFC2)

hsa-miR-605-5p

0.978136055966

Gene details
	loading...
miRNA details
	loading...

pubMed links: miRNA | gene | both
UCSC graphic

Region

Binding Type

Transcript position

Score

Conservation

UTR3

7mer

1340-1354

0.0185365879861464

Position on chromosome:

12:104498392-104498406

Conserved species:

panTro2,rheMac2,bosTau4,canFam2

Binding area:

(Transcript)	5'	UAUGAUACCCCCCA___AAGAU_______	3'
		______________GCA_____GGAUUUA
		______________\|\|\|_____\|\|\|\|\|\|\|
		______________CGU_____CCUAAAU
(miRNA)	3'	_____________C___GGUAC_______	5'

UTR3

8mer

1434-1447

0.0549243399012681

Position on chromosome:

12:104498486-104498499

Conserved species:

panTro2,rheMac2,rn4,mm9,oryCun2,bosTau4,canFam2,loxAfr3,echTel1

Binding area:

(Transcript)	5'	AUAUAAUUUUUGUA___A_____________U	3'
		______________AAG__AC__UGGGAUUU_
		______________\|\|\|__\|\|__\|\|\|\|\|\|\|\|_
		______________UUC__UG__ACCCUAAA_
(miRNA)	3'	_____________C___CG__GU________U	5'

UTR3

7mer

2174-2200

0.0124597305805632

Position on chromosome:

12:104496847-104496873

Conserved species:

Not Conserved

Binding area:

(Transcript)	5'	CC___U__ACUUGUGU_____A_______	3'
		__AAG_CA________UCAUG_GGAUUUA
		__\|\|\|_\|\|________.\|\|\|\|_\|\|\|\|\|\|\|
		__UUC_GU________GGUAC_CCUAAAU
(miRNA)	3'	_C___C_______________________	5'

ENSG00000111727 (HCFC2)

hsa-miR-190a-3p

0.975174877151369

Gene details
	loading...
miRNA details
	loading...

pubMed links: miRNA | gene | both
UCSC graphic

Region

Binding Type

Transcript position

Score

Conservation

UTR3

6mer

202-223

0.00495356896012894

Position on chromosome:

12:104497254-104497275

Conserved species:

panTro2,rheMac2,mm9

Binding area:

(Transcript)	5'	AGUAUAU____UCUUCCUUACAG______	3'
		_______GAGU____________AUAUAG
		_______\|\|.\|____________\|\|\|\|\|\|
		_______CUUA____________UAUAUC
(miRNA)	3'	______C____UACAAACUA_________	5'

UTR3

7mer

359-375

0.00662378888796085

Position on chromosome:

12:104497411-104497427

Conserved species:

panTro2,rheMac2

Binding area:

(Transcript)	5'	GCUGUUGUAUAC____C___UCU_______	3'
		____________UAUG__UG___UAUAUAG
		____________\|\|\|\|__\|\|___\|\|\|\|\|\|\|
		____________AUAC__AC___AUAUAUC
(miRNA)	3'	___________U____AA__U_________	5'

UTR3

8mer

1348-1375

0.0192027964564471

Position on chromosome:

12:104498400-104498427

Conserved species:

panTro2,rheMac2,oryCun2,canFam2,loxAfr3

Binding area:

(Transcript)	5'	____UUUAAU____CAGAA__________U	3'
		_GGA______UGUG_____UUGAUAUAUA_
		_\|\|\|______\|.\|\|_____\|\|\|\|\|\|\|\|\|\|_
		_CCU______AUAC_____AACUAUAUAU_
(miRNA)	3'	U___U_________A______________C	5'

UTR3

7mer

1408-1424

0.0399203515994067

Position on chromosome:

12:104498460-104498476

Conserved species:

panTro2,rheMac2,rn4,mm9,oryCun2,bosTau4,canFam2,loxAfr3,echTel1,monDom5

Binding area:

(Transcript)	5'	UAAAGUGUAUA__________A_______A	3'
		___________GAAUAU_UUU_AUAUAUA_
		___________\|\|\|\|\|\|_\|\|\|_\|\|\|\|\|\|\|_
		___________CUUAUA_AAA_UAUAUAU_
(miRNA)	3'	__________C______C___C_______C	5'

ENSG00000111727 (HCFC2)

hsa-miR-520d-5p

0.97417969238388

Gene details
	loading...
miRNA details
	loading...

pubMed links: miRNA | gene | both
UCSC graphic

Region

Binding Type

Transcript position

Score

Conservation

UTR3

6mer

110-121

0.0176437681262466

Position on chromosome:

12:104497162-104497173

Conserved species:

panTro2,rheMac2,rn4,mm9,oryCun2,bosTau4,canFam2,dasNov2,loxAfr3

Binding area:

(Transcript)	5'	UUCCAGCAGUUAUGAA___GAG______A	3'
		________________CUU___UUUGUA_
		________________\|\|\|___\|\|\|\|\|\|_
		________________GAA___AAACAU_
(miRNA)	3'	_______________C___GGG______C	5'

UTR3

6mer

946-964

0.0110955660149006

Position on chromosome:

12:104497998-104498016

Conserved species:

panTro2,rheMac2,rn4,mm9,oryCun2,bosTau4,canFam2,dasNov2,loxAfr3,monDom5

Binding area:

(Transcript)	5'	UUUUAAAAU__U_____AAA_A______A	3'
		_________AG_GUUUU___C_UUUGUA_
		_________\|\|_\|.\|\|.___\|_\|\|\|\|\|\|_
		_________UC_CGAAG___G_AAACAU_
(miRNA)	3'	________U__C_____G__________C	5'

UTR3

6mer

968-975

0.00583325092542223

Position on chromosome:

12:104498020-104498027

Conserved species:

panTro2,rheMac2,oryCun2,bosTau4,canFam2,dasNov2

Binding area:

(Transcript)	5'	UGUUUUAAACAUUUGUAAGA________A	3'
		____________________UUUUUGUA_
		____________________..\|\|\|\|\|\|_
		____________________GGAAACAU_
(miRNA)	3'	___________________G________C	5'

UTR3

6mer

1426-1433

0.0144442196162696

Position on chromosome:

12:104498478-104498485

Conserved species:

panTro2,rheMac2,rn4,mm9,oryCun2,bosTau4,canFam2,echTel1

Binding area:

(Transcript)	5'	UAGAAUAUUUUAAUAUAUAA________A	3'
		____________________UUUUUGUA_
		____________________..\|\|\|\|\|\|_
		____________________GGAAACAU_
(miRNA)	3'	___________________G________C	5'

UTR3

6mer

1441-1466

0.0210246121367463

Position on chromosome:

12:104498493-104498518

Conserved species:

panTro2,rheMac2,rn4,mm9,oryCun2,bosTau4,canFam2,loxAfr3,echTel1,monDom5,galGal3

Binding area:

(Transcript)	5'	CU___A_____AUACUACAGUA______A	3'
		__GGG_UUUUU___________UUUGUA_
		__\|\|\|_\|\|...___________\|\|\|\|\|\|_
		__CCC_AAGGG___________AAACAU_
(miRNA)	3'	_U___G______________________C	5'

ENSG00000111727 (HCFC2)

hsa-miR-5692a

0.972840322916777

Gene details
	loading...
miRNA details
	loading...

pubMed links: miRNA | gene | both
UCSC graphic

Region

Binding Type

Transcript position

Score

Conservation

UTR3

7mer

17-39

0.0240042472616912

Position on chromosome:

12:104497069-104497091

Conserved species:

panTro2,rheMac2,oryCun2,bosTau4,canFam2,echTel1

Binding area:

(Transcript)	5'	ACUGA_G________AUGAUG_______A	3'
		_____A_CUAUUGUG______AUUAUUU_
		_____\|_\|.\|.\|\|\|\|______\|\|\|\|\|\|\|_
		_____U_GGUGACAC______UAAUAAA_
(miRNA)	3'	____G_G________CA___________C	5'

UTR3

7mer

484-511

0.00674739947629352

Position on chromosome:

12:104497536-104497563

Conserved species:

panTro2

Binding area:

(Transcript)	5'	G_____AUAAUA___CUAAUA________	3'
		_AUACU______AUU______GUUAUUUG
		_\|.\|\|.______\|.\|______.\|\|\|\|\|\|\|
		_UGUGG______UGA______UAAUAAAC
(miRNA)	3'	______G________CACCA_________	5'

UTR3

8mer

575-598

0.0134359762536198

Position on chromosome:

12:104497627-104497650

Conserved species:

panTro2,rheMac2,dasNov2

Binding area:

(Transcript)	5'	AGAA__UG_UU___AACUUU________U	3'
		____AC__C__UUG______UAUUAUUU_
		____\|\|__\|__.\|\|______\|\|\|\|\|\|\|\|_
		____UG__G__GAC______AUAAUAAA_
(miRNA)	3'	______UG_GU___ACC___________C	5'

UTR3

6mer

979-996

0.0127750191976512

Position on chromosome:

12:104498031-104498048

Conserved species:

panTro2,rheMac2,rn4,mm9,oryCun2,bosTau4,canFam2,dasNov2,loxAfr3,echTel1,monDom5,galGal3

Binding area:

(Transcript)	5'	UUUUGUAAAU____UAAA___U_________U	3'
		__________GCUC____UGU____UUAUUU_
		__________.\|.\|____\|\|\|____\|\|\|\|\|\|_
		__________UGGG____ACA____AAUAAA_
(miRNA)	3'	_________G____UG_____CCAU______C	5'

UTR3

6mer

1438-1464

0.0122297402801679

Position on chromosome:

12:104498490-104498516

Conserved species:

panTro2,rheMac2,rn4,mm9,oryCun2,bosTau4,canFam2,loxAfr3,echTel1,monDom5

Binding area:

(Transcript)	5'	GA__________UUUUAUACUACAG______	3'
		__ACUG_GG_AU_____________UAUUUG
		__\|\|\|\|_\|\|_\|\|_____________\|\|\|\|\|\|
		__UGAC_CC_UA_____________AUAAAC
(miRNA)	3'	_G____A__A_____________________	5'

ENSG00000111727 (HCFC2)

hsa-miR-524-5p

0.97263185289847

Gene details
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miRNA details
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pubMed links: miRNA | gene | both
UCSC graphic

Region

Binding Type

Transcript position

Score

Conservation

UTR3

6mer

101-121

0.0175541816328084

Position on chromosome:

12:104497153-104497173

Conserved species:

panTro2,rheMac2,rn4,mm9,oryCun2,bosTau4,canFam2,dasNov2,loxAfr3

Binding area:

(Transcript)	5'	UUCCAGC___UA_GAA__UGAG______A	3'
		_______AGU__U___CU____UUUGUA_
		_______\|\|\|__\|___\|.____\|\|\|\|\|\|_
		_______UCA__A___GG____AAACAU_
(miRNA)	3'	______U___CG_AG_____________C	5'

UTR3

6mer

946-964

0.0100195571443027

Position on chromosome:

12:104497998-104498016

Conserved species:

panTro2,rheMac2,rn4,mm9,oryCun2,bosTau4,canFam2,dasNov2,loxAfr3,monDom5

Binding area:

(Transcript)	5'	UUUUAAAAU________AAA_A______A	3'
		_________AGUGUUUU___C_UUUGUA_
		_________\|\|\|\|.\|\|.___\|_\|\|\|\|\|\|_
		_________UCACGAAG___G_AAACAU_
(miRNA)	3'	________U________G__________C	5'

UTR3

6mer

948-975

0.00581493435407758

Position on chromosome:

12:104498000-104498027

Conserved species:

panTro2,rheMac2,oryCun2,bosTau4,canFam2,dasNov2

Binding area:

(Transcript)	5'	_______AAACAUUUGUAAGA________A	3'
		_UGUUUU______________UUUUUGUA_
		_\|\|.\|\|.______________..\|\|\|\|\|\|_
		_ACGAAG______________GGAAACAU_
(miRNA)	3'	C____________________________C	5'

UTR3

6mer

1426-1433

0.0144442196162696

Position on chromosome:

12:104498478-104498485

Conserved species:

panTro2,rheMac2,rn4,mm9,oryCun2,bosTau4,canFam2,echTel1

Binding area:

(Transcript)	5'	UAGAAUAUUUUAAUAUAUAA________A	3'
		____________________UUUUUGUA_
		____________________..\|\|\|\|\|\|_
		____________________GGAAACAU_
(miRNA)	3'	___________________G________C	5'

UTR3

6mer

1441-1466

0.021231014467966

Position on chromosome:

12:104498493-104498518

Conserved species:

panTro2,rheMac2,rn4,mm9,oryCun2,bosTau4,canFam2,loxAfr3,echTel1,monDom5,galGal3

Binding area:

(Transcript)	5'	CU____UUUUUAUA__A_AGUA______A	3'
		__GGGA________CU_C____UUUGUA_
		__\|.\|\|________\|\|_\|____\|\|\|\|\|\|_
		__CUCU________GA_G____AAACAU_
(miRNA)	3'	______UUCAC_____A_GG________C	5'

ENSG00000111727 (HCFC2)

hsa-miR-7856-5p

0.972156694238322

Gene details
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miRNA details
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pubMed links: miRNA | gene | both
UCSC graphic

Region

Binding Type

Transcript position

Score

Conservation

UTR3

6mer

59-74

0.0059834973531838

Position on chromosome:

12:104497111-104497126

Conserved species:

panTro2,rheMac2,bosTau4,canFam2,loxAfr3

Binding area:

(Transcript)	5'	AACUGGUUAUGAA_____G_______________	3'
		_____________GAUUU_UCA_____UUUAAAA
		_____________\|\|\|.._\|\|\|_____.\|\|\|\|\|\|
		_____________CUAGG_AGU_____GAAUUUU
(miRNA)	3'	__________________G___CACAG_______	5'

UTR3

7mer

110-135

0.0349602066888175

Position on chromosome:

12:104497162-104497187

Conserved species:

panTro2,rheMac2,rn4,mm9,bosTau4,canFam2,dasNov2,loxAfr3

Binding area:

(Transcript)	5'	GAA___G__UUUGUAAAU___________	3'
		___CUU_AG_________UGUUCUUAAAA
		___\|.\|_\|\|_________\|\|\|.\|\|\|\|\|\|\|
		___GGA_UC_________ACAGGAAUUUU
(miRNA)	3'	__G___G______________________	5'

UTR3

6mer

543-557

0.00514410076338759

Position on chromosome:

12:104497595-104497609

Conserved species:

panTro2,rheMac2,mm9,bosTau4

Binding area:

(Transcript)	5'	CAGUUAGCACAGAG____AGAAA_______	3'
		______________CUUA______UUAAAA
		______________\|\|.\|______\|\|\|\|\|\|
		______________GAGU______AAUUUU
(miRNA)	3'	_____________G____CACAGG______	5'

UTR3

6mer

842-859

0.00460381934566904

Position on chromosome:

12:104497894-104497911

Conserved species:

panTro2,rheMac2,oryCun2,bosTau4,canFam2,loxAfr3

Binding area:

(Transcript)	5'	CUCUAAUUUUG_____GCUAAAA______	3'
		___________CUUUU_______UUAAAA
		___________\|..\|._______\|\|\|\|\|\|
		___________GGGAG_______AAUUUU
(miRNA)	3'	__________A_____UCACAGG______	5'

UTR3

6mer

920-944

0.00254794224131036

Position on chromosome:

12:104497972-104497996

Conserved species:

panTro2,rheMac2

Binding area:

(Transcript)	5'	AGCA____AA___GACACAAG________	3'
		____CCUU__CAG________UUUUAAAA
		____\|\|.\|__\|\|\|________..\|\|\|\|\|\|
		____GGGA__GUC________GGAAUUUU
(miRNA)	3'	___A_________ACA_____________	5'

UTR3

7mer

1069-1089

0.0155350301028895

Position on chromosome:

12:104498121-104498141

Conserved species:

panTro2,rheMac2,bosTau4,canFam2,dasNov2,loxAfr3

Binding area:

(Transcript)	5'	CUAACUCA______A___CAA_________	3'
		________GGUUCC_UUA____CCUUAAAG
		________\|.\|.\|\|_\|.\|____\|\|\|\|\|\|\|.
		________CUAGGG_AGU____GGAAUUUU
(miRNA)	3'	__________________CACA________	5'

ENSG00000111727 (HCFC2)

hsa-let-7a-3p

0.964116696752174

Gene details
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miRNA details
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pubMed links: miRNA | gene | both
UCSC graphic

Region

Binding Type

Transcript position

Score

Conservation

UTR3

7mer

343-357

0.00681158153303244

Position on chromosome:

12:104497395-104497409

Conserved species:

panTro2,rheMac2

Binding area:

(Transcript)	5'	GAUGAUUCUGGUA__U_GCU________C	3'
		_____________AC_G___GUUGUAUA_
		_____________\|\|_\|___.\|\|\|\|\|\|\|_
		_____________UG_C___UAACAUAU_
(miRNA)	3'	____________C__U_AUC________C	5'

UTR3

8mer

1018-1025

0.0359375852655856

Position on chromosome:

12:104498070-104498077

Conserved species:

panTro2,rheMac2,rn4,mm9,oryCun2,bosTau4,canFam2,dasNov2,loxAfr3

Binding area:

(Transcript)	5'	UGCAUUGUUUUUACCUUGAA________A	3'
		____________________AUUGUAUA_
		____________________\|\|\|\|\|\|\|\|_
		____________________UAACAUAU_
(miRNA)	3'	___________________C________C	5'

UTR3

7mer

1385-1408

0.0217435733052827

Position on chromosome:

12:104498437-104498460

Conserved species:

panTro2,rheMac2,rn4,mm9,oryCun2,bosTau4,canFam2,loxAfr3,echTel1,monDom5

Binding area:

(Transcript)	5'	UGUUC____UACUAAUUUAAAG_______	3'
		_____CAGU_____________UGUAUAG
		_____\|\|\|\|_____________\|\|\|\|\|\|\|
		_____GUCA_____________ACAUAUC
(miRNA)	3'	____U____UCUA________________	5'

ENSG00000111727 (HCFC2)

hsa-miR-4789-3p

0.962338261290998

Gene details
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miRNA details
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pubMed links: miRNA | gene | both
UCSC graphic

Region

Binding Type

Transcript position

Score

Conservation

UTR3

8mer

466-483

0.0286232820794986

Position on chromosome:

12:104497518-104497535

Conserved species:

panTro2,rheMac2

Binding area:

(Transcript)	5'	CAACUGUCUUC___UG_AUAA_________	3'
		___________UAU__G_____UAUGUGUG
		___________\|\|\|__._____\|\|\|\|\|\|\|\|
		___________AUA__U_____AUACACAC
(miRNA)	3'	__________U___UG_GGACG________	5'

UTR3

8mer

1357-1381

0.0350486824416067

Position on chromosome:

12:104498409-104498433

Conserved species:

panTro2,rheMac2,oryCun2,loxAfr3

Binding area:

(Transcript)	5'	UAAU______GAA___AUAUA________	3'
		____UGUGCA___UUG_____UAUGUGUG
		____\|.\|.\|\|___.\|\|_____\|\|\|\|\|\|\|\|
		____AUAUGU___GAC_____AUACACAC
(miRNA)	3'	___U______G_____G____________	5'

ENSG00000111727 (HCFC2)

hsa-let-7f-1-3p

0.962207042333869

Gene details
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miRNA details
	loading...

pubMed links: miRNA | gene | both
UCSC graphic

Region

Binding Type

Transcript position

Score

Conservation

UTR3

7mer

333-357

0.00692113562610226

Position on chromosome:

12:104497385-104497409

Conserved species:

panTro2,rheMac2

Binding area:

(Transcript)	5'	GAU__UUCU_____C___CU________C	3'
		___GA____GGUAA_UGG__GUUGUAUA_
		___\|\|____\|\|.\|\|_\|.\|__.\|\|\|\|\|\|\|_
		___CU____CCGUU_AUC__UAACAUAU_
(miRNA)	3'	__C__U______________________C	5'

UTR3

8mer

1018-1025

0.0359375852655856

Position on chromosome:

12:104498070-104498077

Conserved species:

panTro2,rheMac2,rn4,mm9,oryCun2,bosTau4,canFam2,dasNov2,loxAfr3

Binding area:

(Transcript)	5'	UGCAUUGUUUUUACCUUGAA________A	3'
		____________________AUUGUAUA_
		____________________\|\|\|\|\|\|\|\|_
		____________________UAACAUAU_
(miRNA)	3'	___________________C________C	5'

UTR3

7mer

1392-1408

0.020754169190845

Position on chromosome:

12:104498444-104498460

Conserved species:

panTro2,rheMac2,rn4,mm9,oryCun2,bosTau4,canFam2,loxAfr3,echTel1,monDom5

Binding area:

(Transcript)	5'	UGUUCCAGUUAC____UUAAAG_______	3'
		____________UAAU______UGUAUAG
		____________.\|\|\|______\|\|\|\|\|\|\|
		____________GUUA______ACAUAUC
(miRNA)	3'	___________C____UCUA_________	5'

ENSG00000111727 (HCFC2)

hsa-miR-1183

0.960931117607755

Gene details
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miRNA details
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pubMed links: miRNA | gene | both
UCSC graphic

Region

Binding Type

Transcript position

Score

Conservation

UTR3

6mer

223-246

0.00646097860722395

Position on chromosome:

12:104497275-104497298

Conserved species:

panTro2,rheMac2

Binding area:

(Transcript)	5'	AUAUA____________AAAGAAAA______	3'
		_____GCU__CUUUUAU________ACAGUG
		_____\|\|.__\|\|.\|.\|.________\|\|\|\|\|\|
		_____CGG__GAGAGUG________UGUCAC
(miRNA)	3'	____A___GU_______GUAGUGGA______	5'

UTR3

6mer

514-532

0.00499802807634376

Position on chromosome:

12:104497566-104497584

Conserved species:

panTro2,rheMac2,dasNov2,loxAfr3,echTel1

Binding area:

(Transcript)	5'	UUAUUUGAU___U_____UG_____________U	3'
		_________UCC_UUCUU__U_____UUACAGU_
		_________.\|\|_.\|\|\|.__._____.\|\|\|\|\|\|_
		_________GGG_GAGAG__G_____GAUGUCA_
(miRNA)	3'	________C___U_____UG_UAGUG_______C	5'

UTR3

7mer

1444-1459

0.0515610317711121

Position on chromosome:

12:104498496-104498511

Conserved species:

panTro2,rheMac2,rn4,mm9,oryCun2,bosTau4,canFam2,loxAfr3,echTel1,monDom5

Binding area:

(Transcript)	5'	UAAAGAACUGGG________A____________A	3'
		____________AUUUUUAU______CUACAGU_
		____________\|.\|.\|.\|.______\|\|\|\|\|\|\|_
		____________UGAGAGUG______GAUGUCA_
(miRNA)	3'	___________G________GUAGUG_______C	5'

UTR3

7mer

1121-1147

0.00568482338043299

Position on chromosome:

12:104480683-104480709

Conserved species:

Not Conserved

Binding area:

(Transcript)	5'	A____AAGUGGGAUGAAGUG________U	3'
		_UGUC_______________UCUACAGU_
		_\|\|.\|_______________.\|\|\|\|\|\|\|_
		_ACGG_______________GGAUGUCA_
(miRNA)	3'	_____GUGAGAGUGGUAGU_________C	5'

ENSG00000111727 (HCFC2)

hsa-miR-3915

0.960258352538743

Gene details
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miRNA details
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pubMed links: miRNA | gene | both
UCSC graphic

Region

Binding Type

Transcript position

Score

Conservation

UTR3

8mer

697-717

0.0360475253551055

Position on chromosome:

12:104497749-104497769

Conserved species:

panTro2,rheMac2,oryCun2,canFam2,dasNov2,loxAfr3

Binding area:

(Transcript)	5'	UUAACUU__CU____C__A_________U	3'
		_______AU__GGCC_UC_UUUUCCUCA_
		_______\|\|__\|.\|\|_\|\|_\|\|\|\|\|\|\|\|\|_
		_______UA__CUGG_AG_AAAAGGAGU_
(miRNA)	3'	______U__UU____U____________U	5'

UTR3

7mer

1299-1317

0.0267105075855438

Position on chromosome:

12:104498351-104498369

Conserved species:

panTro2,rheMac2,oryCun2,bosTau4,dasNov2

Binding area:

(Transcript)	5'	UUAGGUUGAC____UA_____G__________	3'
		__________UGAG__GCUAU____UCCUCAA
		__________\|.\|\|__.\|.\|\|____\|\|\|\|\|\|\|
		__________AUUC__UGGUA____AGGAGUU
(miRNA)	3'	_________U___________GAAA_______	5'

ENSG00000111727 (HCFC2)

hsa-miR-935

0.960027128202469

Gene details
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miRNA details
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pubMed links: miRNA | gene | both
UCSC graphic

Region

Binding Type

Transcript position

Score

Conservation

UTR3

8mer

44-51

0.0375705733506312

Position on chromosome:

12:104497096-104497103

Conserved species:

panTro2,rheMac2,mm9,bosTau4,canFam2,loxAfr3,echTel1

Binding area:

(Transcript)	5'	UGUGAUGAUGAUUAUUUAUUA________	3'
		_____________________GUAACUGG
		_____________________\|\|\|\|\|\|\|\|
		__________