| |
| | | Ensembl Gene Id | miRNA name | miTG score | Also Predicted | | | | | | | | 1 | ENSG00000085721 (RRN3) | hsa-miR-5589-3p | 0.993906270772214 |   | |  | | | | Gene details  | | loading... | | | miRNA details | | loading... | |
pubMed links: miRNA | gene | both
UCSC graphic | | | Region | Binding Type | Transcript position | Score | Conservation | | | | | | | | | | | | UTR3 | 8mer | 1502-1513 | 0.0884886218933919 | 8 | | | | | | | | | | | Position on chromosome: | 16:15155381-15155392 | | Conserved species: | panTro2,rheMac2,rn4,oryCun2,bosTau4,canFam2,loxAfr3,monDom5 | | Binding area: | | (Transcript) | 5' | UACAGACAAAAUGAAGA_________________ | 3' | | | _________________CUA_____UCAUGUGCA | | | | _________________|||_____.|||||||| | | | | _________________GAU_____GGUACACGU | | | (miRNA) | 3' | ________________C___CCAAC_________ | 5' |
|
| | | | | | | | | UTR3 | 6mer | 714-733 | 0.00191535585529439 | 1 | | | | | | | | | | | Position on chromosome: | 16:15154593-15154612 | | Conserved species: | panTro2 | | Binding area: | | (Transcript) | 5' | GUGCAGUCU___U_____AUG___________ | 3' | | | _________UGG___CUG____GCUGUGUGCA | | | | _________|||___||.____||..|||||| | | | | _________ACC___GAU____CGGUACACGU | | | (miRNA) | 3' | ____________CUC___CCAA__________ | 5' |
|
| | | | | | | | | UTR3 | 6mer | 608-628 | 0.00356413488185492 | 3 | | | | | | | | | | | Position on chromosome: | 16:15154487-15154507 | | Conserved species: | panTro2,rheMac2,canFam2 | | Binding area: | | (Transcript) | 5' | AAGACCUC___UUAAAA___AAUU______ | 3' | | | ________GCU_______CA____UGUGCA | | | | ________|||_______||____|||||| | | | | ________CGA_______GU____ACACGU | | | (miRNA) | 3' | _______U___UCCAACG____________ | 5' |
|
| | |
| | | | | 2 | ENSG00000085721 (RRN3) | hsa-miR-7153-3p | 0.992032670721449 | | | | | | | | Gene details | | loading... | | | miRNA details | | loading... | |
pubMed links: miRNA | gene | both
UCSC graphic | | | Region | Binding Type | Transcript position | Score | Conservation | | | | | | | | | | | | UTR3 | 8mer | 1335-1355 | 0.0271777165746195 | 1 | | | | | | | | | | | Position on chromosome: | 16:15155214-15155234 | | Conserved species: | panTro2 | | Binding area: | | (Transcript) | 5' | UAACAUG___UUUU___A_A________C | 3' | | | _______GGU____GUC_G_UCCAUGGU_ | | | | _______|||____..|_|_||||||||_ | | | | _______CCA____UGG_C_AGGUACCA_ | | | (miRNA) | 3' | __________UU________________C | 5' |
|
| | | | | | | | | UTR3 | 6mer | 1147-1160 | 0.00134830830792323 | 0 | | | | | | | | | | | Position on chromosome: | 16:15155026-15155039 | | Conserved species: | Not Conserved | | Binding area: | | (Transcript) | 5' | GGAAAGCUGAGAGC__GC___A_______C | 3' | | | ______________UG__CCG__CAUGGU_ | | | | ______________|.__|||__||||||_ | | | | ______________AU__GGC__GUACCA_ | | | (miRNA) | 3' | _____________C__UU___AG______C | 5' |
|
| | | | | | | | | UTR3 | 9mer | 79-98 | 0.0535182307354633 | 1 | | | | | | | | | | | Position on chromosome: | 16:15153958-15153977 | | Conserved species: | panTro2 | | Binding area: | | (Transcript) | 5' | AAGGAGUUU_____AAAAAA_________ | 3' | | | _________GUGAA______UCCAUGGUG | | | | _________||.||______||||||||| | | | | _________CAUUU______AGGUACCAC | | | (miRNA) | 3' | ________C_____GGC____________ | 5' |
|
| | | | | | | | | UTR3 | 6mer | 58-82 | 0.00751138345474058 | 4 | | | | | | | | | | | Position on chromosome: | 16:15153937-15153961 | | Conserved species: | panTro2,rheMac2,dasNov2,loxAfr3 | | Binding area: | | (Transcript) | 5' | CAU______AAUGAAACAA__A_______U | 3' | | | ___GGUGAA__________UG__CAUGGU_ | | | | ___|||.||__________.|__||||||_ | | | | ___CCAUUU__________GC__GUACCA_ | | | (miRNA) | 3' | _________G___________AG______C | 5' |
|
| | |
| | | | | 3 | ENSG00000085721 (RRN3) | hsa-miR-381-3p | 0.991482655364588 | | | | | | | | Gene details | | loading... | | | miRNA details | | loading... | |
pubMed links: miRNA | gene | both
UCSC graphic | | | Region | Binding Type | Transcript position | Score | Conservation | | | | | | | | | | | | UTR3 | 6mer | 666-680 | 0.00459001297128224 | 4 | | | | | | | | | | | Position on chromosome: | 16:15154545-15154559 | | Conserved species: | panTro2,rheMac2,bosTau4,dasNov2 | | Binding area: | | (Transcript) | 5' | AAUCCUUCUCUAA___CUC_________U | 3' | | | _____________AGC___UUUUUGUAU_ | | | | _____________|||___...||||||_ | | | | _____________UCG___GGGAACAUA_ | | | (miRNA) | 3' | ____________C___AAC_________U | 5' |
|
| | | | | | | | | UTR3 | 8mer | 405-427 | 0.0861592839962867 | 6 | | | | | | | | | | | Position on chromosome: | 16:15154284-15154306 | | Conserved species: | panTro2,rheMac2,bosTau4,canFam2,dasNov2,loxAfr3 | | Binding area: | | (Transcript) | 5' | UUUUCC______UUGUA___A________ | 3' | | | ______AGGGCU_____UGC_CUUGUAUA | | | | ______||.|||_____|||_|||||||| | | | | ______UCUCGA_____ACG_GAACAUAU | | | (miRNA) | 3' | _____C______________G________ | 5' |
|
| | | | | | | | | UTR3 | 7mer | 1544-1559 | 0.0159700186937928 | 0 | | | | | | | | | | | Position on chromosome: | 16:15180046-15180061 | | Conserved species: | Not Conserved | | Binding area: | | (Transcript) | 5' | UAUUUGGCUUUU____GUAA________C | 3' | | | ____________CUUG____UCUUGUAU_ | | | | ____________||||____.|||||||_ | | | | ____________GAAC____GGAACAUA_ | | | (miRNA) | 3' | ___________C____G___________U | 5' |
|
| | |
| | | | | 4 | ENSG00000085721 (RRN3) | hsa-miR-6830-3p | 0.988497927269182 | | | | | | | | Gene details | | loading... | | | miRNA details | | loading... | |
pubMed links: miRNA | gene | both
UCSC graphic | | | Region | Binding Type | Transcript position | Score | Conservation | | | | | | | | | | | | UTR3 | 6mer | 1271-1276 | 0.00619953566614723 | 4 | | | | | | | | | | | Position on chromosome: | 16:15155150-15155155 | | Conserved species: | panTro2,rheMac2,oryCun2,dasNov2 | | Binding area: | | (Transcript) | 5' | CUCUAAGAUAAAACUUCUAUUU______U | 3' | | | ______________________AAAGAC_ | | | | ______________________||||||_ | | | | ______________________UUUCUG_ | | | (miRNA) | 3' | _____________________C______U | 5' |
|
| | | | | | | | | UTR3 | 7mer | 1000-1023 | 0.0124481766338054 | 3 | | | | | | | | | | | Position on chromosome: | 16:15154879-15154902 | | Conserved species: | panTro2,rheMac2,monDom5 | | Binding area: | | (Transcript) | 5' | GCACA____AAAAAU___UUUA_________ | 3' | | | _____GCGA______GGA______AAAGACA | | | | _____||.|______|||______||||||| | | | | _____CGUU______CCU______UUUCUGU | | | (miRNA) | 3' | ____A____C________CUCUUC_______ | 5' |
|
| | | | | | | | | UTR3 | 9mer | 134-160 | 0.0648484496367707 | 1 | | | | | | | | | | | Position on chromosome: | 16:15154013-15154039 | | Conserved species: | rheMac2 | | Binding area: | | (Transcript) | 5' | UU____A_U__UUUUAAUGU_________ | 3' | | | __GGGA_G_AG_________AGAAAGACA | | | | __||||_|_||_________||||||||| | | | | __CCCU_C_UC_________UCUUUCUGU | | | (miRNA) | 3' | _U_________U_________________ | 5' |
|
| | |
| | | | | 5 | ENSG00000085721 (RRN3) | hsa-miR-300 | 0.985651555572827 | | | | | | | | Gene details | | loading... | | | miRNA details | | loading... | |
pubMed links: miRNA | gene | both
UCSC graphic | | | Region | Binding Type | Transcript position | Score | Conservation | | | | | | | | | | | | UTR3 | 6mer | 666-680 | 0.00455799777003415 | 4 | | | | | | | | | | | Position on chromosome: | 16:15154545-15154559 | | Conserved species: | panTro2,rheMac2,bosTau4,dasNov2 | | Binding area: | | (Transcript) | 5' | AAUCCUUCUCUAA__C__C_________U | 3' | | | _____________AG_CU_UUUUUGUAU_ | | | | _____________||_||_...||||||_ | | | | _____________UC_GA_GGGAACAUA_ | | | (miRNA) | 3' | ____________C__A__C_________U | 5' |
|
| | | | | | | | | UTR3 | 8mer | 405-427 | 0.0767943133965819 | 6 | | | | | | | | | | | Position on chromosome: | 16:15154284-15154306 | | Conserved species: | panTro2,rheMac2,bosTau4,canFam2,dasNov2,loxAfr3 | | Binding area: | | (Transcript) | 5' | UUUUCC____CUUU__A___A________ | 3' | | | ______AGGG____GU_UGC_CUUGUAUA | | | | ______||.|____||_|||_|||||||| | | | | ______UCUC____CA_ACG_GAACAUAU | | | (miRNA) | 3' | __________UCU___G___G________ | 5' |
|
| | | | | | | | | UTR3 | 7mer | 1544-1556 | 0.016268471962163 | 0 | | | | | | | | | | | Position on chromosome: | 16:15180046-15180058 | | Conserved species: | Not Conserved | | Binding area: | | (Transcript) | 5' | UAUUUGGCUUUUCUU___AA__________C | 3' | | | _______________GGU____UCUUGUAU_ | | | | _______________.||____.|||||||_ | | | | _______________UCA____GGAACAUA_ | | | (miRNA) | 3' | ______________C___GACG________U | 5' |
|
| | |
| | | | | 6 | ENSG00000085721 (RRN3) | hsa-miR-3130-5p | 0.984558598057271 |  | | | | | | | Gene details | | loading... | | | miRNA details | | loading... | |
pubMed links: miRNA | gene | both
UCSC graphic | | | Region | Binding Type | Transcript position | Score | Conservation | | | | | | | | | | | | UTR3 | 8mer | 1554-1570 | 0.0263228328539015 | 1 | | | | | | | | | | | Position on chromosome: | 16:15155433-15155449 | | Conserved species: | panTro2 | | Binding area: | | (Transcript) | 5' | GACUGAAUCAA_____U_A_________U | 3' | | | ___________GCAUC_G_AGACUGGGU_ | | | | ___________|||.|_|_|||||||||_ | | | | ___________CGUGG_C_UCUGACCCA_ | | | (miRNA) | 3' | __________A_______C_________U | 5' |
|
| | | | | | | | | UTR3 | 8mer | 1405-1423 | 0.0522943623716503 | 1 | | | | | | | | | | | Position on chromosome: | 16:15155284-15155302 | | Conserved species: | panTro2 | | Binding area: | | (Transcript) | 5' | UAACAGCUUU___A___AAUU_________ | 3' | | | __________UUG_CAC_____ACUGGGUA | | | | __________.||_|||_____|||||||| | | | | __________GAC_GUG_____UGACCCAU | | | (miRNA) | 3' | _________C_______GCCUC________ | 5' |
|
| | |
| | | | | 7 | ENSG00000085721 (RRN3) | hsa-miR-3613-3p | 0.976912260492338 | | | | | | | | Gene details | | loading... | | | miRNA details | | loading... | |
pubMed links: miRNA | gene | both
UCSC graphic | | | Region | Binding Type | Transcript position | Score | Conservation | | | | | | | | | | | | UTR3 | 9mer | 1546-1564 | 0.0152194706808899 | 1 | | | | | | | | | | | Position on chromosome: | 16:15155425-15155443 | | Conserved species: | panTro2 | | Binding area: | | (Transcript) | 5' | UCAAGCAUCU____AC__________________ | 3' | | | __________GAAG___UGGG____UUUUUUUGU | | | | __________||||___||||____||||||||| | | | | __________CUUC___ACCC____AAAAAAACA | | | (miRNA) | 3' | ______________CCA____GAAA_________ | 5' |
|
| | | | | | | | | UTR3 | 8mer | 1436-1443 | 0.0104576317487642 | 2 | | | | | | | | | | | Position on chromosome: | 16:15155315-15155322 | | Conserved species: | panTro2,rheMac2 | | Binding area: | | (Transcript) | 5' | UUUGCUUGUUUAAUAUGUACA________ | 3' | | | _____________________UUUUUUGU | | | | _____________________|||||||| | | | | _____________________AAAAAACA | | | (miRNA) | 3' | ____________________A________ | 5' |
|
| | | | | | | | | UTR3 | 6mer | 1421-1439 | 0.00379095441996043 | 2 | | | | | | | | | | | Position on chromosome: | 16:15155300-15155318 | | Conserved species: | panTro2,rheMac2 | | Binding area: | | (Transcript) | 5' | GUACAUUUU___U___AACAGC______A | 3' | | | _________UUG_GUU______UUUUUG_ | | | | _________|||_|.|______||||||_ | | | | _________AAC_CGA______AAAAAC_ | | | (miRNA) | 3' | ________C___C___AAAA________A | 5' |
|
| | | | | | | | | UTR3 | 7mer | 1347-1374 | 0.00634762711668833 | 4 | | | | | | | | | | | Position on chromosome: | 16:15155226-15155253 | | Conserved species: | panTro2,oryCun2,canFam2,loxAfr3 | | Binding area: | | (Transcript) | 5' | C______CU_____AACAUGGG_______ | 3' | | | _GGGUUG__GUUUU________UUUUUGU | | | | _||||||__|.|||________||||||| | | | | _CCCAAC__CGAAA________AAAAACA | | | (miRNA) | 3' | U______C______AA_____________ | 5' |
|
| | | | | | | | | UTR3 | 7mer | 668-674 | 0.00835198826851122 | 5 | | | | | | | | | | | Position on chromosome: | 16:15154547-15154553 | | Conserved species: | panTro2,rheMac2,bosTau4,canFam2,dasNov2 | | Binding area: | | (Transcript) | 5' | UGAAAUCCUUCUCUAAAGCCUC_______ | 3' | | | ______________________UUUUUGU | | | | ______________________||||||| | | | | ______________________AAAAACA | | | (miRNA) | 3' | _____________________A_______ | 5' |
|
| | | | | | | | | UTR3 | 8mer | 541-548 | 0.0118862506095224 | 5 | | | | | | | | | | | Position on chromosome: | 16:15154420-15154427 | | Conserved species: | panTro2,bosTau4,canFam2,loxAfr3,echTel1 | | Binding area: | | (Transcript) | 5' | CUUUGUUUCUUACAUGUGUAC________ | 3' | | | _____________________UUUUUUGU | | | | _____________________|||||||| | | | | _____________________AAAAAACA | | | (miRNA) | 3' | ____________________A________ | 5' |
|
| | | | | | | | | UTR3 | 6mer | 450-455 | 0.00873183828272978 | 8 | | | | | | | | | | | Position on chromosome: | 16:15154329-15154334 | | Conserved species: | panTro2,rheMac2,oryCun2,bosTau4,canFam2,dasNov2,loxAfr3,echTel1 | | Binding area: | | (Transcript) | 5' | CAAUAUUUUCUUGAUCAUAAAUA______ | 3' | | | _______________________UUUUGU | | | | _______________________|||||| | | | | _______________________AAAACA | | | (miRNA) | 3' | ______________________A______ | 5' |
|
| | | | | | | | | UTR3 | 7mer | 352-358 | 0.00777369585540657 | 2 | | | | | | | | | | | Position on chromosome: | 16:15154231-15154237 | | Conserved species: | panTro2,rheMac2 | | Binding area: | | (Transcript) | 5' | UGAAUUUCAGUCUGUAAAUAC_______G | 3' | | | _____________________UUUUUUG_ | | | | _____________________|||||||_ | | | | _____________________AAAAAAC_ | | | (miRNA) | 3' | ____________________A_______A | 5' |
|
| | | | | | | | | UTR3 | 7mer | 416-431 | 0.013963003022132 | 0 | | | | | | | | | | | Position on chromosome: | 16:15162039-15162054 | | Conserved species: | Not Conserved | | Binding area: | | (Transcript) | 5' | UGCCUGCCCUCA_U____AAC_______C | 3' | | | ____________G_GGUU___UUUUUUG_ | | | | ____________|_||.|___|||||||_ | | | | ____________C_CCGA___AAAAAAC_ | | | (miRNA) | 3' | ___________A______AAA_______A | 5' |
|
| | |
| | | | | 8 | ENSG00000085721 (RRN3) | hsa-miR-4700-5p | 0.976796003611392 | | | | | | | | Gene details | | loading... | | | miRNA details | | loading... | |
pubMed links: miRNA | gene | both
UCSC graphic | | | Region | Binding Type | Transcript position | Score | Conservation | | | | | | | | | | | | UTR3 | 8mer | 191-213 | 0.0729876975292651 | 2 | | | | | | | | | | | Position on chromosome: | 16:15154070-15154092 | | Conserved species: | panTro2,rheMac2 | | Binding area: | | (Transcript) | 5' | GAUAAA___A___AAA_GAAAU________ | 3' | | | ______ACG__GU___C_____UCCCCAGA | | | | ______||.__||___|_____|||||||| | | | | ______UGU__CA___G_____AGGGGUCU | | | (miRNA) | 3' | _____G___GA__G___AGU__________ | 5' |
|
| | | | | | | | | UTR3 | 7mer | 110-136 | 0.0238809656376519 | 0 | | | | | | | | | | | Position on chromosome: | 16:15155711-15155737 | | Conserved species: | Not Conserved | | Binding area: | | (Transcript) | 5' | UG__UUU___AAAGG__AAGUG_______ | 3' | | | __AC___CUG_____CG_____CCCCAGA | | | | __||___|||_____|._____||||||| | | | | __UG___GAC_____GU_____GGGGUCU | | | (miRNA) | 3' | ____UGU___AGGA___A___________ | 5' |
|
| | |
| | | | | 9 | ENSG00000085721 (RRN3) | hsa-miR-499b-5p | 0.970951875282568 | | | | | | | | Gene details | | loading... | | | miRNA details | | loading... | |
pubMed links: miRNA | gene | both
UCSC graphic | | | Region | Binding Type | Transcript position | Score | Conservation | | | | | | | | | | | | UTR3 | 6mer | 1207-1223 | 0.00445440733756874 | 2 | | | | | | | | | | | Position on chromosome: | 16:15155086-15155102 | | Conserved species: | panTro2,rheMac2 | | Binding area: | | (Transcript) | 5' | CACCUUCUGCUG__________UUU______ | 3' | | | ____________UAUU__GGUA___GUCUGU | | | | ____________.||.__.|.|___|||||| | | | | ____________GUAG__UCGU___CAGACA | | | (miRNA) | 3' | ___________U____UG____U________ | 5' |
|
| | | | | | | | | UTR3 | 7mer | 365-379 | 0.015367221791054 | 4 | | | | | | | | | | | Position on chromosome: | 16:15154244-15154258 | | Conserved species: | panTro2,rheMac2,oryCun2,bosTau4 | | Binding area: | | (Transcript) | 5' | GGCAAUGUAGAGUU_____U_______________ | 3' | | | ______________UGAAU_UC______AGUCUGU | | | | ______________||||._||______||||||| | | | | ______________ACUUG_AG______UCAGACA | | | (miRNA) | 3' | ___________________U__UGUCGU_______ | 5' |
|
| | | | | | | | | UTR3 | 8mer | 117-137 | 0.0482403474146995 | 3 | | | | | | | | | | | Position on chromosome: | 16:15153996-15154016 | | Conserved species: | panTro2,rheMac2,canFam2 | | Binding area: | | (Transcript) | 5' | UGUAGAAA_____UUA______________ | 3' | | | ________GACAU___CAUA_UAAGUCUGU | | | | ________.||||___||.|_.|||||||| | | | | ________UUGUA___GUGU_GUUCAGACA | | | (miRNA) | 3' | _______C____________C_________ | 5' |
|
| | |
| | | | | 10 | ENSG00000085721 (RRN3) | hsa-miR-4482-3p | 0.959143038255226 | | | | | | | | Gene details | | loading... | | | miRNA details | | loading... | |
pubMed links: miRNA | gene | both
UCSC graphic | | | Region | Binding Type | Transcript position | Score | Conservation | | | | | | | | | | | | UTR3 | 9mer | 341-359 | 0.0577577575287867 | 4 | | | | | | | | | | | Position on chromosome: | 16:15154220-15154238 | | Conserved species: | panTro2,rheMac2,canFam2,dasNov2 | | Binding area: | | (Transcript) | 5' | UCUGUAAAUA_UU_U____A_________ | 3' | | | __________C__U_UUGG_AAAUAGAAA | | | | __________|__._.||._||||||||| | | | | __________G__G_GACU_UUUAUCUUU | | | (miRNA) | 3' | _________C_GG_U____C_________ | 5' |
|
| | | | | | | | | UTR3 | 6mer | 138-162 | 0.00440568072179764 | 2 | | | | | | | | | | | Position on chromosome: | 16:15154017-15154041 | | Conserved species: | panTro2,rheMac2 | | Binding area: | | (Transcript) | 5' | UGGG________UAGUUUUAAUG______ | 3' | | | ____UUGGGAAG___________UAGAAA | | | | ____.||.|||.___________|||||| | | | | ____GACUCUUU___________AUCUUU | | | (miRNA) | 3' | ___U_________________________ | 5' |
|
| | | | | | | | | UTR3 | 7mer | 1591-1608 | 0.0128335921801536 | 0 | | | | | | | | | | | Position on chromosome: | 16:15180093-15180110 | | Conserved species: | Not Conserved | | Binding area: | | (Transcript) | 5' | AUAUUAAGAUU___UU_G_U___________ | 3' | | | ___________GCC__G_U___GAAUAGAAG | | | | ___________|||__._|___.|||||||. | | | | ___________CGG__U_A___UUUAUCUUU | | | (miRNA) | 3' | __________U___GG_G_CUC_________ | 5' |
|
| | |
| | | | | 11 | ENSG00000085721 (RRN3) | hsa-miR-548c-3p | 0.947017972344002 | | | | | | | | Gene details | | loading... | | | miRNA details | | loading... | |
pubMed links: miRNA | gene | both
UCSC graphic | | | Region | Binding Type | Transcript position | Score | Conservation | | | | | | | | | | | | UTR3 | 6mer | 1547-1570 | 0.00419545858762314 | 1 | | | | | | | | | | | Position on chromosome: | 16:15155426-15155449 | | Conserved species: | panTro2 | | Binding area: | | (Transcript) | 5' | AUCAA___UCU____AC______UU______ | 3' | | | _____GCA___GAAG____UGGG__UUUUUG | | | | _____|||___.|||____||.|__|||||| | | | | _____CGU___UUUC____ACUC__AAAAAC | | | (miRNA) | 3' | _______________AUUA____U_______ | 5' |
|
| | | | | | | | | UTR3 | 6mer | 1439-1461 | 0.00488547097565789 | 3 | | | | | | | | | | | Position on chromosome: | 16:15155318-15155340 | | Conserved species: | panTro2,rheMac2,dasNov2 | | Binding area: | | (Transcript) | 5' | GAUUU__UU_UU____A__UAC______U | 3' | | | _____GC__G__UAAU_UG___AUUUUU_ | | | | _____||__.__||||_||___||||||_ | | | | _____CG__U__AUUA_AC___UAAAAA_ | | | (miRNA) | 3' | _______UU_UC_______UC_______C | 5' |
|
| | | | | | | | | UTR3 | 6mer | 794-799 | 0.00412572790563664 | 2 | | | | | | | | | | | Position on chromosome: | 16:15154673-15154678 | | Conserved species: | panTro2,dasNov2 | | Binding area: | | (Transcript) | 5' | UUUCUUUGUUGGAAACAGGAAA______U | 3' | | | ______________________AUUUUU_ | | | | ______________________||||||_ | | | | ______________________UAAAAA_ | | | (miRNA) | 3' | _____________________C______C | 5' |
|
| | | | | | | | | UTR3 | 6mer | 669-674 | 0.00579247880992894 | 5 | | | | | | | | | | | Position on chromosome: | 16:15154548-15154553 | | Conserved species: | panTro2,rheMac2,bosTau4,canFam2,dasNov2 | | Binding area: | | (Transcript) | 5' | GUGAAAUCCUUCUCUAAAGCCUC______ | 3' | | | _______________________UUUUUG | | | | _______________________|||||| | | | | _______________________AAAAAC | | | (miRNA) | 3' | ______________________U______ | 5' |
|
| | | | | | | | | UTR3 | 6mer | 662-682 | 0.00329523502828563 | 4 | | | | | | | | | | | Position on chromosome: | 16:15154541-15154561 | | Conserved species: | panTro2,rheMac2,bosTau4,dasNov2 | | Binding area: | | (Transcript) | 5' | CUUCUCU____CCUCUUU___U_______A | 3' | | | _______AAAG_______UUG__AUUUUU_ | | | | _______||||_______|||__||||||_ | | | | _______UUUC_______AAC__UAAAAA_ | | | (miRNA) | 3' | ______U____AUU_______UC______C | 5' |
|
| | | | | | | | | UTR3 | 6mer | 542-557 | 0.00537785087694086 | 6 | | | | | | | | | | | Position on chromosome: | 16:15154421-15154436 | | Conserved species: | panTro2,rheMac2,bosTau4,canFam2,loxAfr3,echTel1 | | Binding area: | | (Transcript) | 5' | ACUUUGUUUCUUA__U_____UACU_________ | 3' | | | _____________CA___GUG_______UUUUUG | | | | _____________||___||._______|||||| | | | | _____________GU___CAU_______AAAAAC | | | (miRNA) | 3' | ____________C__UUU___UAACUCU______ | 5' |
|
| | | | | | | | | UTR3 | 6mer | 352-372 | 0.00945190424760479 | 8 | | | | | | | | | | | Position on chromosome: | 16:15154231-15154251 | | Conserved species: | panTro2,rheMac2,rn4,mm9,oryCun2,bosTau4,canFam2,loxAfr3 | | Binding area: | | (Transcript) | 5' | UUGAAUUU___UCU____AUACU_______ | 3' | | | ________CAG___GUAA______UUUUUG | | | | ________||.___||||______|||||| | | | | ________GUU___CAUU______AAAAAC | | | (miRNA) | 3' | _______C___UU_____AACUCU______ | 5' |
|
| | | | | | | | | UTR3 | 6mer | 336-348 | 0.00858785827557118 | 6 | | | | | | | | | | | Position on chromosome: | 16:15154215-15154227 | | Conserved species: | panTro2,rheMac2,canFam2,dasNov2,loxAfr3,echTel1 | | Binding area: | | (Transcript) | 5' | AAUACUUUUUUGGAA___A__A______A | 3' | | | _______________AAU_GA_AUUUUU_ | | | | _______________|||_||_||||||_ | | | | _______________UUA_CU_UAAAAA_ | | | (miRNA) | 3' | ______________A___A__C______C | 5' |
|
| | | | | | | | | UTR3 | 7mer | 228-244 | 0.0121193711603555 | 2 | | | | | | | | | | | Position on chromosome: | 16:15154107-15154123 | | Conserved species: | panTro2,rheMac2 | | Binding area: | | (Transcript) | 5' | UUUAACUGCUG______U__U____________U | 3' | | | ___________GCAAAA_GU______GAUUUUU_ | | | | ___________||||||_||______|||||||_ | | | | ___________CGUUUU_CA______CUAAAAA_ | | | (miRNA) | 3' | ____________________UUAACU_______C | 5' |
|
| | |
| | | | | 12 | ENSG00000085721 (RRN3) | hsa-miR-548d-3p | 0.946446204719853 | | | | | | | | Gene details | | loading... | | | miRNA details | | loading... | |
pubMed links: miRNA | gene | both
UCSC graphic | | | Region | Binding Type | Transcript position | Score | Conservation | | | | | | | | | | | | UTR3 | 7mer | 1550-1570 | 0.00886349041737653 | 1 | | | | | | | | | | | Position on chromosome: | 16:15155429-15155449 | | Conserved species: | panTro2 | | Binding area: | | (Transcript) | 5' | GAAUCAA___UCU_A______________U | 3' | | | _______GCA___G_AGACUG_GGUUUUU_ | | | | _______|||___|_|.||||_|||||||_ | | | | _______CGU___C_UUUGAC_CCAAAAA_ | | | (miRNA) | 3' | __________UUU________A_______C | 5' |
|
| | | | | | | | | UTR3 | 6mer | 1547-1570 | 0.00330858508087653 | 1 | | | | | | | | | | | Position on chromosome: | 16:15155426-15155449 | | Conserved species: | panTro2 | | Binding area: | | (Transcript) | 5' | AUCAA___UCU_A_________UU______ | 3' | | | _____GCA___G_AGACUG_GG__UUUUUG | | | | _____|||___|_|.||||_||__|||||| | | | | _____CGU___C_UUUGAC_CC__AAAAAC | | | (miRNA) | 3' | ________UUU________A__________ | 5' |
|
| | | | | | | | | UTR3 | 6mer | 1437-1449 | 0.00422257131916704 | 2 | | | | | | | | | | | Position on chromosome: | 16:15155316-15155328 | | Conserved species: | panTro2,rheMac2 | | Binding area: | | (Transcript) | 5' | AUUUGCUUGUUUAAUA___ACAU______ | 3' | | | ________________UGU____UUUUUG | | | | ________________|||____|||||| | | | | ________________ACA____AAAAAC | | | (miRNA) | 3' | _______________G___CC________ | 5' |
|
| | | | | | | | | UTR3 | 6mer | 1421-1445 | 0.00375798853380563 | 2 | | | | | | | | | | | Position on chromosome: | 16:15155300-15155324 | | Conserved species: | panTro2,rheMac2 | | Binding area: | | (Transcript) | 5' | UGUA__UUUU________UUAACAGC______ | 3' | | | ____CA_______UUGUG________UUUUUG | | | | ____||_______.||||________|||||| | | | | ____GU_______GACAC________AAAAAC | | | (miRNA) | 3' | ___C__UUUCUUU_____C_____________ | 5' |
|
| | | | | | | | | UTR3 | 8mer | 1348-1375 | 0.0158044660806173 | 2 | | | | | | | | | | | Position on chromosome: | 16:15155227-15155254 | | Conserved species: | panTro2,canFam2 | | Binding area: | | (Transcript) | 5' | A____UU_______UUUAACAUG________ | 3' | | | _CGGG____GCUGU_________GGUUUUUG | | | | _|...____.||||_________|||||||| | | | | _GUUU____UGACA_________CCAAAAAC | | | (miRNA) | 3' | C____UCUU______________________ | 5' |
|
| | | | | | | | | UTR3 | 6mer | 669-682 | 0.00680674502567572 | 5 | | | | | | | | | | | Position on chromosome: | 16:15154548-15154561 | | Conserved species: | panTro2,rheMac2,bosTau4,canFam2,dasNov2 | | Binding area: | | (Transcript) | 5' | GUGAAAUCCUUCUCU____C____C_________ | 3' | | | _______________AAAG___CU____UUUUUG | | | | _______________||||___||____|||||| | | | | _______________UUUC___GA____AAAAAC | | | (miRNA) | 3' | ______________U____UUU__CACC______ | 5' |
|
| | | | | | | | | UTR3 | 6mer | 542-558 | 0.00537421745410247 | 6 | | | | | | | | | | | Position on chromosome: | 16:15154421-15154437 | | Conserved species: | panTro2,rheMac2,bosTau4,canFam2,loxAfr3,echTel1 | | Binding area: | | (Transcript) | 5' | ACUUUGUUUCUU__A____UACU______ | 3' | | | ____________AC_UGUG____UUUUUG | | | | ____________||_||||____|||||| | | | | ____________UG_ACAC____AAAAAC | | | (miRNA) | 3' | ___________U_______C_________ | 5' |
|
| | | | | | | | | UTR3 | 6mer | 352-371 | 0.00950798668837283 | 8 | | | | | | | | | | | Position on chromosome: | 16:15154231-15154250 | | Conserved species: | panTro2,rheMac2,rn4,mm9,oryCun2,bosTau4,canFam2,loxAfr3 | | Binding area: | | (Transcript) | 5' | UUGAAUUUC__U______AAAUACU______ | 3' | | | _________AG___CUGU_______UUUUUG | | | | _________||___||||_______|||||| | | | | _________UC___GACA_______AAAAAC | | | (miRNA) | 3' | ________U__UUU____CC___________ | 5' |
|
| | |
| | | | | 13 | ENSG00000085721 (RRN3) | hsa-miR-548bb-3p | 0.94530798053918 | | | | | | | | Gene details | | loading... | | | miRNA details | | loading... | |
pubMed links: miRNA | gene | both
UCSC graphic | | | Region | Binding Type | Transcript position | Score | Conservation | | | | | | | | | | | | UTR3 | 7mer | 1550-1570 | 0.00867882075552234 | 1 | | | | | | | | | | | Position on chromosome: | 16:15155429-15155449 | | Conserved species: | panTro2 | | Binding area: | | (Transcript) | 5' | GAAUCAA___UCU__________________U | 3' | | | _______GCA___GAAG__ACUG_GGUUUUU_ | | | | _______|||___.|||__|||._|||||||_ | | | | _______CGU___UUUC__UGAU_CCAAAAA_ | | | (miRNA) | 3' | _________________AU____A_______C | 5' |
|
| | | | | | | | | UTR3 | 6mer | 1547-1570 | 0.00368637058094982 | 1 | | | | | | | | | | | Position on chromosome: | 16:15155426-15155449 | | Conserved species: | panTro2 | | Binding area: | | (Transcript) | 5' | AUCAA___UCU_____________UU______ | 3' | | | _____GCA___GAAG__ACUG_GG__UUUUUG | | | | _____|||___.|||__|||._||__|||||| | | | | _____CGU___UUUC__UGAU_CC__AAAAAC | | | (miRNA) | 3' | _______________AU____A__________ | 5' |
|
| | | | | | | | | UTR3 | 6mer | 1437-1461 | 0.00412567835929348 | 2 | | | | | | | | | | | Position on chromosome: | 16:15155316-15155340 | | Conserved species: | panTro2,rheMac2 | | Binding area: | | (Transcript) | 5' | AUUU__UU____UUAA____UACAU______ | 3' | | | ____GC____GU____UAUG_____UUUUUG | | | | ____||____||____||||_____|||||| | | | | ____CG____CA____AUAC_____AAAAAC | | | (miRNA) | 3' | ______UUUU__UUG_____C__________ | 5' |
|
| | | | | | | | | UTR3 | 6mer | 1421-1445 | 0.00386333791676702 | 2 | | | | | | | | | | | Position on chromosome: | 16:15155300-15155324 | | Conserved species: | panTro2,rheMac2 | | Binding area: | | (Transcript) | 5' | UGUA__UUUU________UUAACAGC______ | 3' | | | ____CA_______UUGUG________UUUUUG | | | | ____||_______.|.||________|||||| | | | | ____GU_______GAUAC________AAAAAC | | | (miRNA) | 3' | ___C__UUUCAUU_____C_____________ | 5' |
|
| | | | | | | | | UTR3 | 8mer | 1348-1375 | 0.0153063304985207 | 2 | | | | | | | | | | | Position on chromosome: | 16:15155227-15155254 | | Conserved species: | panTro2,canFam2 | | Binding area: | | (Transcript) | 5' | A_______U_____UUUAACAUG________ | 3' | | | _CG__GGU_GCUGU_________GGUUUUUG | | | | _|.__.||_.||.|_________|||||||| | | | | _GU__UCA_UGAUA_________CCAAAAAC | | | (miRNA) | 3' | C__UU___U______________________ | 5' |
|
| | | | | | | | | UTR3 | 6mer | 669-682 | 0.00680674502567572 | 5 | | | | | | | | | | | Position on chromosome: | 16:15154548-15154561 | | Conserved species: | panTro2,rheMac2,bosTau4,canFam2,dasNov2 | | Binding area: | | (Transcript) | 5' | GUGAAAUCCUUCUCU____C____C_________ | 3' | | | _______________AAAG___CU____UUUUUG | | | | _______________||||___||____|||||| | | | | _______________UUUC___GA____AAAAAC | | | (miRNA) | 3' | ______________U____AUU__UACC______ | 5' |
|
| | | | | | | | | UTR3 | 6mer | 542-557 | 0.00540769077484855 | 6 | | | | | | | | | | | Position on chromosome: | 16:15154421-15154436 | | Conserved species: | panTro2,rheMac2,bosTau4,canFam2,loxAfr3,echTel1 | | Binding area: | | (Transcript) | 5' | ACUUUGUUUCUUA__U_____U_____________ | 3' | | | _____________CA___GUG_ACU____UUUUUG | | | | _____________||___||._|||____|||||| | | | | _____________GU___CAU_UGA____AAAAAC | | | (miRNA) | 3' | ____________C__UUU_______UACC______ | 5' |
|
| | | | | | | | | UTR3 | 6mer | 352-372 | 0.00940767733628469 | 8 | | | | | | | | | | | Position on chromosome: | 16:15154231-15154251 | | Conserved species: | panTro2,rheMac2,rn4,mm9,oryCun2,bosTau4,canFam2,loxAfr3 | | Binding area: | | (Transcript) | 5' | UUGAAUUU___UCU___AAU_____________ | 3' | | | ________CAG___GUA___ACU____UUUUUG | | | | ________||.___|||___|||____|||||| | | | | ________GUU___CAU___UGA____AAAAAC | | | (miRNA) | 3' | _______C___UU__________UACC______ | 5' |
|
| | |
| | | | | 14 | ENSG00000085721 (RRN3) | hsa-miR-1290 | 0.944080390928349 | | | | | | | | Gene details | | loading... | | | miRNA details | | loading... | |
pubMed links: miRNA | gene | both
UCSC graphic | | | Region | Binding Type | Transcript position | Score | Conservation | | | | | | | | | | | | UTR3 | 6mer | 689-701 | 0.00385202009340138 | 4 | | | | | | | | | | | Position on chromosome: | 16:15154568-15154580 | | Conserved species: | panTro2,rheMac2,bosTau4,loxAfr3 | | Binding area: | | (Transcript) | 5' | GCAUCGCACAUUCGG________________U | 3' | | | _______________CUUGGU___GAAAUCC_ | | | | _______________|.||.|___.||||||_ | | | | _______________GGACUA___UUUUAGG_ | | | (miRNA) | 3' | ______________G______GGU_______U | 5' |
|
| | | | | | | | | UTR3 | 9mer | 84-101 | 0.0530466012511193 | 3 | | | | | | | | | | | Position on chromosome: | 16:15153963-15153980 | | Conserved species: | panTro2,rheMac2,mm9 | | Binding area: | | (Transcript) | 5' | UUUCAAAGGAG___G___AA__________ | 3' | | | ___________UUU_UGA___AAAAAUCCA | | | | ___________|.._|||___||||||||| | | | | ___________AGG_ACU___UUUUUAGGU | | | (miRNA) | 3' | ______________G___AGG_________ | 5' |
|
| | |
| | | | | 15 | ENSG00000085721 (RRN3) | hsa-miR-32-5p | 0.94371697833129 | | | | | | | | Gene details | | loading... | | | miRNA details | | loading... | |
pubMed links: miRNA | gene | both
UCSC graphic | | | Region | Binding Type | Transcript position | Score | Conservation | | | | | | | | | | | | UTR3 | 8mer | 1500-1515 | 0.0507230815939668 | 9 | | | | | | | | | | | Position on chromosome: | 16:15155379-15155394 | | Conserved species: | panTro2,rheMac2,rn4,oryCun2,bosTau4,canFam2,dasNov2,loxAfr3,monDom5 | | Binding area: | | (Transcript) | 5' | AGACAAAAUGAA____AUC___________C | 3' | | | ____________GACU_____AUGUGCAAU_ | | | | ____________.|||_____|||||||||_ | | | | ____________UUGA_____UACACGUUA_ | | | (miRNA) | 3' | ___________G____AUCAU_________U | 5' |
|
| | | | | | | | | UTR3 | 6mer | 474-500 | 0.00606337406650346 | 5 | | | | | | | | | | | Position on chromosome: | 16:15154353-15154379 | | Conserved species: | panTro2,rheMac2,mm9,canFam2,loxAfr3 | | Binding area: | | (Transcript) | 5' | UC___C____UAUU___A_GCAA______ | 3' | | | __UGC_ACUU____UAA_G____GCAAUA | | | | __|||_||||____|||_|____|||||| | | | | __ACG_UGAA____AUU_C____CGUUAU | | | (miRNA) | 3' | _____U____UC_____A_A_________ | 5' |
|
| | |
| | | | | 16 | ENSG00000085721 (RRN3) | hsa-miR-548as-3p | 0.943646053390757 | | | | | | | | Gene details | | loading... | | | miRNA details | | loading... | |
pubMed links: miRNA | gene | both
UCSC graphic | | | Region | Binding Type | Transcript position | Score | Conservation | | | | | | | | | | | | UTR3 | 8mer | 1551-1573 | 0.0231891984557039 | 1 | | | | | | | | | | | Position on chromosome: | 16:15155430-15155452 | | Conserved species: | panTro2 | | Binding area: | | (Transcript) | 5' | UGAAU_______CUG__GAC________U | 3' | | | _____CAAGCAU___AA___UGGGUUUU_ | | | | _____|||.|||___||___||||||||_ | | | | _____GUUUGUA___UU___ACCCAAAA_ | | | (miRNA) | 3' | ____U____________AAC________U | 5' |
|
| | | | | | | | | UTR3 | 6mer | 1376-1395 | 0.00385061716569808 | 3 | | | | | | | | | | | Position on chromosome: | 16:15155255-15155274 | | Conserved species: | panTro2,rheMac2,canFam2 | | Binding area: | | (Transcript) | 5' | AUUUCUAAU___GG__GCAGACU________ | 3' | | | _________AUA__CA_________GUUUUA | | | | _________|.|__||_________|||||| | | | | _________UGU__GU_________CAAAAU | | | (miRNA) | 3' | ____________UU__AUUAACACC______ | 5' |
|
| | | | | | | | | UTR3 | 6mer | 1361-1388 | 0.00300623024149603 | 1 | | | | | | | | | | | Position on chromosome: | 16:15155240-15155267 | | Conserved species: | panTro2 | | Binding area: | | (Transcript) | 5' | A______UGUUUUACG_____CU_______ | 3' | | | _GCAGAC_________GGUUG___GUUUUA | | | | _.||.||_________..|||___|||||| | | | | _UGUUUG_________UUAAC___CAAAAU | | | (miRNA) | 3' | _______UA____________ACC______ | 5' |
|
| | | | | | | | | UTR3 | 8mer | 1350-1376 | 0.0155137569328473 | 2 | | | | | | | | | | | Position on chromosome: | 16:15155229-15155255 | | Conserved species: | panTro2,rheMac2 | | Binding area: | | (Transcript) | 5' | U_________CUGUUUUAACA________U | 3' | | | _ACG_GGUUG___________UGGGUUUU_ | | | | _||._..|||___________||||||||_ | | | | _UGU_UUAAC___________ACCCAAAA_ | | | (miRNA) | 3' | U___A________________________U | 5' |
|
| | | | | | | | | UTR3 | 6mer | 769-792 | 0.00413313427315493 | 4 | | | | | | | | | | | Position on chromosome: | 16:15154648-15154671 | | Conserved species: | panTro2,rheMac2,bosTau4,canFam2 | | Binding area: | | (Transcript) | 5' | UUUUU_____UAUUUG___UAC_______ | 3' | | | _____UAGAU______GUG___GGUUUUG | | | | _____.|.|.______|||___||||||. | | | | _____GUUUG______CAC___CCAAAAU | | | (miRNA) | 3' | ____U_____UAUUAA_____________ | 5' |
|
| | | | | | | | | UTR3 | 6mer | 147-173 | 0.00707170738694199 | 5 | | | | | | | | | | | Position on chromosome: | 16:15154026-15154052 | | Conserved species: | panTro2,rheMac2,canFam2,dasNov2,loxAfr3 | | Binding area: | | (Transcript) | 5' | GG__CU______GUUGGGAAGUA______ | 3' | | | __GU__UUGUGG___________GUUUUA | | | | __.|__||||||___________|||||| | | | | __UA__AACACC___________CAAAAU | | | (miRNA) | 3' | _G__UU_______________________ | 5' |
|
| | |
| | | | | 17 | ENSG00000085721 (RRN3) | hsa-miR-548ac | 0.943328723562468 | | | | | | | | Gene details | | loading... | | | miRNA details | | loading... | |
pubMed links: miRNA | gene | both
UCSC graphic | | | Region | Binding Type | Transcript position | Score | Conservation | | | | | | | | | | | | UTR3 | 7mer | 1550-1559 | 0.00847003707533824 | 1 | | | | | | | | | | | Position on chromosome: | 16:15155429-15155438 | | Conserved species: | panTro2 | | Binding area: | | (Transcript) | 5' | GAAUCAAGCAUCUGAAGA__G_______U | 3' | | | __________________CU_GGUUUUU_ | | | | __________________|._|||||||_ | | | | __________________GG_CCAAAAA_ | | | (miRNA) | 3' | _________________C__________C | 5' |
|
| | | | | | | | | UTR3 | 6mer | 1547-1559 | 0.00387148543314651 | 1 | | | | | | | | | | | Position on chromosome: | 16:15155426-15155438 | | Conserved species: | panTro2 | | Binding area: | | (Transcript) | 5' | AUCAAGCAUCUGAAGA____GUU______ | 3' | | | ________________CUGG___UUUUUG | | | | ________________|.||___|||||| | | | | ________________GGCC___AAAAAC | | | (miRNA) | 3' | _______________C_____________ | 5' |
|
| | | | | | | | | UTR3 | 6mer | 1437-1449 | 0.00418693834980866 | 2 | | | | | | | | | | | Position on chromosome: | 16:15155316-15155328 | | Conserved species: | panTro2,rheMac2 | | Binding area: | | (Transcript) | 5' | AUUUGCUUGUUUAAUA___ACAU______ | 3' | | | ________________UGU____UUUUUG | | | | ________________||.____|||||| | | | | ________________ACG____AAAAAC | | | (miRNA) | 3' | _______________A___GCC_______ | 5' |
|
| | | | | | | | | UTR3 | 6mer | 1421-1445 | 0.00382380379843096 | 2 | | | | | | | | | | | Position on chromosome: | 16:15155300-15155324 | | Conserved species: | panTro2,rheMac2 | | Binding area: | | (Transcript) | 5' | UGUA__UUUUUU___UUAACA_C______ | 3' | | | ____CA______GUG______G_UUUUUG | | | | ____||______||.______|_|||||| | | | | ____GU______CAU______C_AAAAAC | | | (miRNA) | 3' | ______UUU______UAACGG_C______ | 5' |
|
| | | | | | | | | UTR3 | 8mer | 1348-1373 | 0.0151448943020281 | 2 | | | | | | | | | | | Position on chromosome: | 16:15155227-15155252 | | Conserved species: | panTro2,canFam2 | | Binding area: | | (Transcript) | 5' | ACG_______GUUUUAACAUG________ | 3' | | | ___GGUUGCU___________GGUUUUUG | | | | ___..||||.___________|||||||| | | | | ___UUAACGG___________CCAAAAAC | | | (miRNA) | 3' | __A__________________________ | 5' |
|
| | | | | | | | | UTR3 | 6mer | 669-679 | 0.00616625910610314 | 5 | | | | | | | | | | | Position on chromosome: | 16:15154548-15154558 | | Conserved species: | panTro2,rheMac2,bosTau4,canFam2,dasNov2 | | Binding area: | | (Transcript) | 5' | GUGAAAUCCUUCUCUAAA___UC______ | 3' | | | __________________GCC__UUUUUG | | | | __________________|||__|||||| | | | | __________________CGG__AAAAAC | | | (miRNA) | 3' | _________________A___CC______ | 5' |
|
| | | | | | | | | UTR3 | 6mer | 542-553 | 0.00547328350262098 | 6 | | | | | | | | | | | Position on chromosome: | 16:15154421-15154432 | | Conserved species: | panTro2,rheMac2,bosTau4,canFam2,loxAfr3,echTel1 | | Binding area: | | (Transcript) | 5' | ACUUUGUUUCUUACAUG___ACU______ | 3' | | | _________________UGU___UUUUUG | | | | _________________||.___|||||| | | | | _________________ACG___AAAAAC | | | (miRNA) | 3' | ________________A___GCC______ | 5' |
|
| | | | | | | | | UTR3 | 6mer | 352-372 | 0.00953067096120693 | 8 | | | | | | | | | | | Position on chromosome: | 16:15154231-15154251 | | Conserved species: | panTro2,rheMac2,rn4,mm9,oryCun2,bosTau4,canFam2,loxAfr3 | | Binding area: | | (Transcript) | 5' | UUGAAUUU___UCU____AUA__________ | 3' | | | ________CAG___GUAA___CU__UUUUUG | | | | ________||.___||||___|.__|||||| | | | | ________GUU___CAUU___GG__AAAAAC | | | (miRNA) | 3' | ___________UU_____AAC__CC______ | 5' |
|
| | |
| | | | | 18 | ENSG00000085721 (RRN3) | hsa-miR-548z | 0.943160227464397 | | | | | | | | Gene details | | loading... | | | miRNA details | | loading... | |
pubMed links: miRNA | gene | both
UCSC graphic | | | Region | Binding Type | Transcript position | Score | Conservation | | | | | | | | | | | | UTR3 | 7mer | 1550-1570 | 0.00859303182055089 | 1 | | | | | | | | | | | Position on chromosome: | 16:15155429-15155449 | | Conserved species: | panTro2 | | Binding area: | | (Transcript) | 5' | GAAUCAA___UCU____AC____________U | 3' | | | _______GCA___GAAG____UG_GGUUUUU_ | | | | _______|||___.|||____||_|||||||_ | | | | _______CGU___UUUC____AC_CCAAAAA_ | | | (miRNA) | 3' | ______A__________AUUA__G_______C | 5' |
|
| | | | | | | | | UTR3 | 6mer | 1547-1570 | 0.00390747197420152 | 1 | | | | | | | | | | | Position on chromosome: | 16:15155426-15155449 | | Conserved species: | panTro2 | | Binding area: | | (Transcript) | 5' | AUCAA___UCU____AC_______UU______ | 3' | | | _____GCA___GAAG____UG_GG__UUUUUG | | | | _____|||___.|||____||_||__|||||| | | | | _____CGU___UUUC____AC_CC__AAAAAC | | | (miRNA) | 3' | ____A__________AUUA__G__________ | 5' |
|
| | | | | | | | | UTR3 | 6mer | 1437-1462 | 0.00409984417990995 | 2 | | | | | | | | | | | Position on chromosome: | 16:15155316-15155341 | | Conserved species: | panTro2,rheMac2 | | Binding area: | | (Transcript) | 5' | AUU___UU_UU____A___ACAU______ | 3' | | | ___UGC__G__UAAU_UGU____UUUUUG | | | | ___|||__.__||||_||.____|||||| | | | | ___ACG__U__AUUA_ACG____AAAAAC | | | (miRNA) | 3' | ______UU_UC________CC________ | 5' |
|
| | | | | | | | | UTR3 | 6mer | 1421-1449 | 0.00377421470599665 | 2 | | | | | | | | | | | Position on chromosome: | 16:15155300-15155328 | | Conserved species: | panTro2,rheMac2 | | Binding area: | | (Transcript) | 5' | ____CAUUUU______UUAACAGC______ | 3' | | | UGUA_______UUGUG________UUUUUG | | | | ||.|_______|||.|________|||||| | | | | ACGU_______AACGC________AAAAAC | | | (miRNA) | 3' | ____UUUCAUU_____C_____________ | 5' |
|
| | | | | | | | | UTR3 | 8mer | 1348-1373 | 0.0145212941618084 | 2 | | | | | | | | | | | Position on chromosome: | 16:15155227-15155252 | | Conserved species: | panTro2,canFam2 | | Binding area: | | (Transcript) | 5' | ACG______UGUUUUAACAUG________ | 3' | | | ___GGUUGC____________GGUUUUUG | | | | ___..||||____________|||||||| | | | | ___UUAACG____________CCAAAAAC | | | (miRNA) | 3' | __A__________________________ | 5' |
|
| | | | | | | | | UTR3 | 6mer | 669-679 | 0.00677745520598014 | 5 | | | | | | | | | | | Position on chromosome: | 16:15154548-15154558 | | Conserved species: | panTro2,rheMac2,bosTau4,canFam2,dasNov2 | | Binding area: | | (Transcript) | 5' | GUGAAAUCCUUCUCUAAA__CUC______ | 3' | | | __________________GC___UUUUUG | | | | __________________||___|||||| | | | | __________________CG___AAAAAC | | | (miRNA) | 3' | _________________A__CC_______ | 5' |
|
| | | | | | | | | UTR3 | 6mer | 542-555 | 0.0054119478843866 | 6 | | | | | | | | | | | Position on chromosome: | 16:15154421-15154434 | | Conserved species: | panTro2,rheMac2,bosTau4,canFam2,loxAfr3,echTel1 | | Binding area: | | (Transcript) | 5' | ACUUUGUUUCUUACA____UACU______ | 3' | | | _______________UGUG____UUUUUG | | | | _______________||.|____|||||| | | | | _______________ACGC____AAAAAC | | | (miRNA) | 3' | ______________A____C_________ | 5' |
|
| | | | | | | | | UTR3 | 6mer | 352-372 | 0.00953067096120693 | 8 | | | | | | | | | | | Position on chromosome: | 16:15154231-15154251 | | Conserved species: | panTro2,rheMac2,rn4,mm9,oryCun2,bosTau4,canFam2,loxAfr3 | | Binding area: | | (Transcript) | 5' | UUGAAUUU___UCU____AUACU_______ | 3' | | | ________CAG___GUAA______UUUUUG | | | | ________||.___||||______|||||| | | | | ________GUU___CAUU______AAAAAC | | | (miRNA) | 3' | _______C___UU_____AACGCC______ | 5' |
|
| | |
| | | | | 19 | ENSG00000085721 (RRN3) | hsa-miR-548h-3p | 0.943160227464397 | | | | | | | | Gene details | | loading... | | | miRNA details | | loading... | |
pubMed links: miRNA | gene | both
UCSC graphic | | | Region | Binding Type | Transcript position | Score | Conservation | | | | | | | | | | | | UTR3 | 7mer | 1550-1570 | 0.00859303182055089 | 1 | | | | | | | | | | | Position on chromosome: | 16:15155429-15155449 | | Conserved species: | panTro2 | | Binding area: | | (Transcript) | 5' | GAAUCAA___UCU____AC____________U | 3' | | | _______GCA___GAAG____UG_GGUUUUU_ | | | | _______|||___.|||____||_|||||||_ | | | | _______CGU___UUUC____AC_CCAAAAA_ | | | (miRNA) | 3' | ______A__________AUUA__G_______C | 5' |
|
| | | | | | | | | UTR3 | 6mer | 1547-1570 | 0.00390747197420152 | 1 | | | | | | | | | | | Position on chromosome: | 16:15155426-15155449 | | Conserved species: | panTro2 | | Binding area: | | (Transcript) | 5' | AUCAA___UCU____AC_______UU______ | 3' | | | _____GCA___GAAG____UG_GG__UUUUUG | | | | _____|||___.|||____||_||__|||||| | | | | _____CGU___UUUC____AC_CC__AAAAAC | | | (miRNA) | 3' | ____A__________AUUA__G__________ | 5' |
|
| | | | | | | | | UTR3 | 6mer | 1437-1462 | 0.00409984417990995 | 2 | | | | | | | | | | | Position on chromosome: | 16:15155316-15155341 | | Conserved species: | panTro2,rheMac2 | | Binding area: | | (Transcript) | 5' | AUU___UU_UU____A___ACAU______ | 3' | | | ___UGC__G__UAAU_UGU____UUUUUG | | | | ___|||__.__||||_||.____|||||| | | | | ___ACG__U__AUUA_ACG____AAAAAC | | | (miRNA) | 3' | ______UU_UC________CC________ | 5' |
|
| | | | | | | | | UTR3 | 6mer | 1421-1449 | 0.00377421470599665 | 2 | | | | | | | | | | | Position on chromosome: | 16:15155300-15155328 | | Conserved species: | panTro2,rheMac2 | | Binding area: | | (Transcript) | 5' | ____CAUUUU______UUAACAGC______ | 3' | | | UGUA_______UUGUG________UUUUUG | | | | ||.|_______|||.|________|||||| | | | | ACGU_______AACGC________AAAAAC | | | (miRNA) | 3' | ____UUUCAUU_____C_____________ | 5' |
|
| | | | | | | | | UTR3 | 8mer | 1348-1373 | 0.0145212941618084 | 2 | | | | | | | | | | | Position on chromosome: | 16:15155227-15155252 | | Conserved species: | panTro2,canFam2 | | Binding area: | | (Transcript) | 5' | ACG______UGUUUUAACAUG________ | 3' | | | ___GGUUGC____________GGUUUUUG | | | | ___..||||____________|||||||| | | | | ___UUAACG____________CCAAAAAC | | | (miRNA) | 3' | __A__________________________ | 5' |
|
| | | | | | | | | UTR3 | 6mer | 669-679 | 0.00677745520598014 | 5 | | | | | | | | | | | Position on chromosome: | 16:15154548-15154558 | | Conserved species: | panTro2,rheMac2,bosTau4,canFam2,dasNov2 | | Binding area: | | (Transcript) | 5' | GUGAAAUCCUUCUCUAAA__CUC______ | 3' | | | __________________GC___UUUUUG | | | | __________________||___|||||| | | | | __________________CG___AAAAAC | | | (miRNA) | 3' | _________________A__CC_______ | 5' |
|
| | | | | | | | | UTR3 | 6mer | 542-555 | 0.0054119478843866 | 6 | | | | | | | | | | | Position on chromosome: | 16:15154421-15154434 | | Conserved species: | panTro2,rheMac2,bosTau4,canFam2,loxAfr3,echTel1 | | Binding area: | | (Transcript) | 5' | ACUUUGUUUCUUACA____UACU______ | 3' | | | _______________UGUG____UUUUUG | | | | _______________||.|____|||||| | | | | _______________ACGC____AAAAAC | | | (miRNA) | 3' | ______________A____C_________ | 5' |
|
| | | | | | | | | UTR3 | 6mer | 352-372 | 0.00953067096120693 | 8 | | | | | | | | | | | Position on chromosome: | 16:15154231-15154251 | | Conserved species: | panTro2,rheMac2,rn4,mm9,oryCun2,bosTau4,canFam2,loxAfr3 | | Binding area: | | (Transcript) | 5' | UUGAAUUU___UCU____AUACU_______ | 3' | | | ________CAG___GUAA______UUUUUG | | | | ________||.___||||______|||||| | | | | ________GUU___CAUU______AAAAAC | | | (miRNA) | 3' | _______C___UU_____AACGCC______ | 5' |
|
| | |
| | | | | 20 | ENSG00000085721 (RRN3) | hsa-miR-5096 | 0.93306899166825 | | | | | | | | Gene details | | loading... | | | miRNA details | | loading... | |
pubMed links: miRNA | gene | both
UCSC graphic | | | Region | Binding Type | Transcript position | Score | Conservation | | | | | | | | | | | | UTR3 | 8mer | 691-711 | 0.01035673370362 | 3 | | | | | | | | | | | Position on chromosome: | 16:15154570-15154590 | | Conserved species: | panTro2,rheMac2,loxAfr3 | | Binding area: | | (Transcript) | 5' | UGUGCAUC__ACAU__GG_U_________ | 3' | | | ________GC____UC__C_UGGUGAAAU | | | | ________||____.|__|_||||||||. | | | | ________CG____GG__G_ACCACUUUG | | | (miRNA) | 3' | __________GACU__UU_U_________ | 5' |
|
| | | | | | | | | UTR3 | 8mer | 76-102 | 0.0355544807072243 | 1 | | | | | | | | | | | Position on chromosome: | 16:15153955-15153981 | | Conserved species: | panTro2 | | Binding area: | | (Transcript) | 5' | A_____UGAAAAAAAAUC__________A | 3' | | | _GUUUG____________CAUGGUGAAA_ | | | | _|..||____________||||||||||_ | | | | _CGGAC____________GUACCACUUU_ | | | (miRNA) | 3' | ______UGGUU_________________G | 5' |
|
| | | | | | | | | UTR3 | 6mer | 69-86 | 0.00476877010202949 | 0 | | | | | | | | | | | Position on chromosome: | 16:15153948-15153965 | | Conserved species: | Not Conserved | | Binding area: | | (Transcript) | 5' | UGAAAAAAAAU___UG___AAAA______ | 3' | | | ___________CCA__GUG____UGAAAC | | | | ___________|||__.||____|||||| | | | | ___________GGU__UAC____ACUUUG | | | (miRNA) | 3' | __________U___UG___C_________ | 5' |
|
| | | | | | | | | UTR3 | 8mer | 1753-1775 | 0.0434111957529356 | 0 | | | | | | | | | | | Position on chromosome: | 16:15185221;15186366-15185228;15186380 | | Conserved species: | Not Conserved | | Binding area: | | (Transcript) | 5' | GUCUUG____AGUA___AAAG________ | 3' | | | ______CUGA____CAA____GGUGAAAC | | | | ______||||____|||____|||||||| | | | | ______GACU____GUU____CCACUUUG | | | (miRNA) | 3' | _____G____G______GUA_________ | 5' |
|
| | |
| | | | | 21 | ENSG00000085721 (RRN3) | hsa-miR-4796-3p | 0.925806472978638 | | | | | | | | Gene details | | loading... | | | miRNA details | | loading... | |
pubMed links: miRNA | gene | both
UCSC graphic | | | Region | Binding Type | Transcript position | Score | Conservation | | | | | | | | | | | | UTR3 | 6mer | 1267-1283 | 0.0037723124126069 | 2 | | | | | | | | | | | Position on chromosome: | 16:15155146-15155162 | | Conserved species: | panTro2,rheMac2 | | Binding area: | | (Transcript) | 5' | UAAGAUAAAACU_____UUAAAG________ | 3' | | | ____________UCUAU________ACUUUA | | | | ____________|||||________|||||| | | | | ____________AGAUA________UGAAAU | | | (miRNA) | 3' | ___________C_____UGAGACGG______ | 5' |
|
| | | | | | | | | UTR3 | 6mer | 565-584 | 0.00387284323285277 | 2 | | | | | | | | | | | Position on chromosome: | 16:15154444-15154463 | | Conserved species: | panTro2,rheMac2 | | Binding area: | | (Transcript) | 5' | CAUUUUGAA____AAGCAUUU________ | 3' | | | _________GCUC________UCACUUUG | | | | _________.|||________.||||||. | | | | _________UGAG________GGUGAAAU | | | (miRNA) | 3' | ________A____AC______________ | 5' |
|
| | | | | | | | | UTR3 | 9mer | 491-509 | 0.0394906791113284 | 3 | | | | | | | | | | | Position on chromosome: | 16:15154370-15154388 | | Conserved species: | panTro2,rheMac2,rn4 | | Binding area: | | (Transcript) | 5' | UUUAAGCAUA_____U_____________ | 3' | | | __________UUUAU_UUCUGCCACUUUA | | | | __________|.|||_.|||||||||||| | | | | __________AGAUA_GAGACGGUGAAAU | | | (miRNA) | 3' | _________C_____U_____________ | 5' |
|
| | | | | | | | | UTR3 | 6mer | 266-289 | 0.00482188133444247 | 1 | | | | | | | | | | | Position on chromosome: | 16:15154145-15154168 | | Conserved species: | panTro2 | | Binding area: | | (Transcript) | 5' | GUUUG___GAAA___A____AGA______ | 3' | | | _____GUG____GUA_UUUG___ACUUUA | | | | _____|||____.||_|.||___|||||| | | | | _____CAC____UAU_AGAC___UGAAAU | | | (miRNA) | 3' | ________AGA____G____GG_______ | 5' |
|
| | |
| | | | | 22 | ENSG00000085721 (RRN3) | hsa-miR-1202 | 0.921469713729945 | | | | | | | | Gene details | | loading... | | | miRNA details | | loading... | |
pubMed links: miRNA | gene | both
UCSC graphic | | | Region | Binding Type | Transcript position | Score | Conservation | | | | | | | | | | | | UTR3 | 6mer | 1592-1606 | 0.00232320821639618 | 2 | | | | | | | | | | | Position on chromosome: | 16:15155471-15155485 | | Conserved species: | panTro2,rheMac2 | | Binding area: | | (Transcript) | 5' | AGAGCGAGUGCCUG____G______________ | 3' | | | ______________CCUC_GCUG____UGGCAC | | | | ______________||.|_.|||____|||||| | | | | ______________GGGG_UGAC____ACCGUG | | | (miRNA) | 3' | _____________A____G____GUCG______ | 5' |
|
| | | | | | | | | UTR3 | 9mer | 1121-1147 | 0.0214495116259499 | 4 | | | | | | | | | | | Position on chromosome: | 16:15155000-15155026 | | Conserved species: | panTro2,rheMac2,bosTau4,canFam2 | | Binding area: | | (Transcript) | 5' | GG___GGGA___AGAGU__G_________ | 3' | | | __UCU____CAC_____UG_AGCUGGCAC | | | | __||.____|||_____||_||||||||| | | | | __AGG____GUG_____AC_UCGACCGUG | | | (miRNA) | 3' | _G___GG____________G_________ | 5' |
|
| | | | | | | | | UTR3 | 6mer | 1025-1034 | 0.00264405841072215 | 2 | | | | | | | | | | | Position on chromosome: | 16:15154904-15154913 | | Conserved species: | panTro2,rheMac2 | | Binding area: | | (Transcript) | 5' | CAGAAUCAGAUGUGUAAUA_______________ | 3' | | | ___________________UACU_____UGGCAC | | | | ___________________.|||_____|||||| | | | | ___________________GUGA_____ACCGUG | | | (miRNA) | 3' | __________________G____CGUCG______ | 5' |
|
| | | | | | | | | UTR3 | 7mer | 242-258 | 0.0245357397540099 | 1 | | | | | | | | | | | Position on chromosome: | 16:15154121-15154137 | | Conserved species: | panTro2 | | Binding area: | | (Transcript) | 5' | UUUAAGGUUGU_____UA_____________A | 3' | | | ___________CUUUU__ACU___GCUGGCA_ | | | | ___________||...__|||___|||||||_ | | | | ___________GAGGG__UGA___CGACCGU_ | | | (miRNA) | 3' | ________________GG___CGU_______G | 5' |
|
| | |
| | | | | 23 | ENSG00000085721 (RRN3) | hsa-miR-4495 | 0.920747061532351 | | | | | | | | Gene details | | loading... | | | miRNA details | | loading... | |
pubMed links: miRNA | gene | both
UCSC graphic | | | Region | Binding Type | Transcript position | Score | Conservation | | | | | | | | | | | | UTR3 | 6mer | 1473-1493 | 0.00491508446503033 | 2 | | | | | | | | | | |
|
|
